1 Response_reg#1
8-117 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:8:4.85e-38:117:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E7D95_RS02025
Response regulator OmpR family
Clostridium sp. · GCF_032480055
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032480055#E7D95_RS02025Stable P2CS identifier used across views.
GenomeGCF_032480055Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 228 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-225 aa · 75 aa · 32.9% of protein
Raw token
Trans_reg_C:151:2.94e-35:225:77:77- Raw architecture: Response_reg:8:4.85e-38:117:111:111#Trans_reg_C:151:2.94e-35:225:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032480055::NZ_JAWEVO010000002.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span151013-153115Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE7D95_02025RefSeq proteinWP_049178173.1
Context group ID
GCF_032480055::NZ_JAWEVO010000002.1::G00005Context members
E7D95_RS02025E7D95_RS02030
Partner locus tags
E7D95_RS02025E7D95_RS02030
Partner old locus tags
E7D95_02025E7D95_02030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_049178173.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE7D95_RS02025Primary locus identifier stored in the genes table.
Old locus tagE7D95_02025Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWEVO010000002.1Sequence record reported by the local genomic context database.
Genomic interval151 013-151 699 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span151 013-153 115 ntGCF_032480055::NZ_JAWEVO010000002.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032480055::NZ_JAWEVO010000002.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWEVO010000002.1All displayed genes belong to this local TCS context.
Neighborhood span151 013-153 115 nt2 103 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
151 013 nt153 115 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E7D95_RS02025GCF_032480055#E7D95_RS02025
RROmpRCurrent focus
151 013-151 699 nt · Forward (+)
E7D95_RS02030GCF_032480055#E7D95_RS02030
HKClassic
151 700-153 115 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003284655#DR013_RS14585Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1314330
Simplified PFAM architecture for RROC_1314330
PFAM domain coverage: 183 / 228 aa (80.3%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[8-117] | Trans_reg_C[153-225]
- Domain count: 2
- Matched identifier: RROC_1314330
- Positioned domains: Response_reg 8-117 ; Response_reg 8-117 ; Trans_reg_C 153-225 ; Trans_reg_C 153-225
Cluster members and taxonomy
Representative gene: GCF_003284655#DR013_RS14585
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032480055
AssemblyASM3248005v1 · Contighaploid
Genome composition3 610 104 bp · 30,0% GCClostridium sp.
Signal transduction countsGenes 75 · HK 39 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key