1 Response_reg#1
4-114 aa · 111 aa · 47.2% of protein
Raw token
Response_reg:4:5.96e-34:114:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E7D95_RS14500
Response regulator OmpR family
Clostridium sp. · GCF_032480055
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032480055#E7D95_RS14500Stable P2CS identifier used across views.
GenomeGCF_032480055Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 235 aa (80.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-233 aa · 77 aa · 32.8% of protein
Raw token
Trans_reg_C:157:8.75e-34:233:77:77- Raw architecture: Response_reg:4:5.96e-34:114:112:111#Trans_reg_C:157:8.75e-34:233:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032480055::NZ_JAWEVO010000035.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6037-8233Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE7D95_14505RefSeq proteinWP_049178924.1
Context group ID
GCF_032480055::NZ_JAWEVO010000035.1::G00033Context members
E7D95_RS14500E7D95_RS14505
Partner locus tags
E7D95_RS14500E7D95_RS14505
Partner old locus tags
E7D95_14505E7D95_14510
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_049178924.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE7D95_RS14500Primary locus identifier stored in the genes table.
Old locus tagE7D95_14505Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWEVO010000035.1Sequence record reported by the local genomic context database.
Genomic interval6 037-6 744 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 037-8 233 ntGCF_032480055::NZ_JAWEVO010000035.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032480055::NZ_JAWEVO010000035.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWEVO010000035.1All displayed genes belong to this local TCS context.
Neighborhood span6 037-8 233 nt2 197 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 037 nt8 233 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E7D95_RS14500GCF_032480055#E7D95_RS14500
RROmpRCurrent focus
6 037-6 744 nt · Forward (+)
E7D95_RS14505GCF_032480055#E7D95_RS14505
HKClassic
6 734-8 233 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003284655#DR013_RS02730Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1024128
Simplified PFAM architecture for RROC_1024128
PFAM domain coverage: 187 / 235 aa (79.6%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-114] | Trans_reg_C[157-232]
- Domain count: 2
- Matched identifier: RROC_1024128
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; Trans_reg_C 157-232 ; Trans_reg_C 157-232
Cluster members and taxonomy
Representative gene: GCF_003284655#DR013_RS02730
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032480055
AssemblyASM3248005v1 · Contighaploid
Genome composition3 610 104 bp · 30,0% GCClostridium sp.
Signal transduction countsGenes 75 · HK 39 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key