1 Response_reg#1
4-114 aa · 111 aa · 48.5% of protein
Raw token
Response_reg:4:6.49e-32:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E7D95_RS14040
Response regulator OmpR family
Clostridium sp. · GCF_032480055
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032480055#E7D95_RS14040Stable P2CS identifier used across views.
GenomeGCF_032480055Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 229 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:151:6.64e-35:227:77:77- Raw architecture: Response_reg:4:6.49e-32:114:111:111#Trans_reg_C:151:6.64e-35:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032480055::NZ_JAWEVO010000033.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span547-2652Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE7D95_14045RefSeq proteinWP_049178065.1
Context group ID
GCF_032480055::NZ_JAWEVO010000033.1::G00032Context members
E7D95_RS14040E7D95_RS14045
Partner locus tags
E7D95_RS14040E7D95_RS14045
Partner old locus tags
E7D95_14045E7D95_14050
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_049178065.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE7D95_RS14040Primary locus identifier stored in the genes table.
Old locus tagE7D95_14045Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWEVO010000033.1Sequence record reported by the local genomic context database.
Genomic interval547-1 236 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span547-2 652 ntGCF_032480055::NZ_JAWEVO010000033.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032480055::NZ_JAWEVO010000033.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWEVO010000033.1All displayed genes belong to this local TCS context.
Neighborhood span547-2 652 nt2 106 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
547 nt2 652 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E7D95_RS14040GCF_032480055#E7D95_RS14040
RROmpRCurrent focus
547-1 236 nt · Forward (+)
E7D95_RS14045GCF_032480055#E7D95_RS14045
HKClassic
1 240-2 652 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003284655#DR013_RS13695Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1260419
Simplified PFAM architecture for RROC_1260419
PFAM domain coverage: 185 / 229 aa (80.8%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[152-226]
- Domain count: 2
- Matched identifier: RROC_1260419
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 152-226 ; Trans_reg_C 152-226
Cluster members and taxonomy
Representative gene: GCF_003284655#DR013_RS13695
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032480055
AssemblyASM3248005v1 · Contighaploid
Genome composition3 610 104 bp · 30,0% GCClostridium sp.
Signal transduction countsGenes 75 · HK 39 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key