1 Response_reg#1
7-115 aa · 109 aa · 47.0% of protein
Raw token
Response_reg:7:1.93e-29:115:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E7D95_RS09060
Response regulator OmpR family
Clostridium sp. · GCF_032480055
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032480055#E7D95_RS09060Stable P2CS identifier used across views.
GenomeGCF_032480055Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 232 aa (79.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-223 aa · 76 aa · 32.8% of protein
Raw token
Trans_reg_C:148:1.07e-29:223:76:77- Raw architecture: Response_reg:7:1.93e-29:115:110:111#Trans_reg_C:148:1.07e-29:223:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032480055::NZ_JAWEVO010000016.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span43986-45919Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE7D95_09060RefSeq proteinWP_049177855.1
Context group ID
GCF_032480055::NZ_JAWEVO010000016.1::G00021Context members
E7D95_RS09055E7D95_RS09060
Partner locus tags
E7D95_RS09055E7D95_RS09060
Partner old locus tags
E7D95_09055E7D95_09060
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_049177855.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE7D95_RS09060Primary locus identifier stored in the genes table.
Old locus tagE7D95_09060Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWEVO010000016.1Sequence record reported by the local genomic context database.
Genomic interval45 230-45 919 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span43 986-45 919 ntGCF_032480055::NZ_JAWEVO010000016.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032480055::NZ_JAWEVO010000016.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWEVO010000016.1All displayed genes belong to this local TCS context.
Neighborhood span43 986-45 919 nt1 934 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
43 986 nt45 919 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E7D95_RS09055GCF_032480055#E7D95_RS09055
HKClassic
43 986-45 257 nt · Reverse (-)
E7D95_RS09060GCF_032480055#E7D95_RS09060
RROmpRCurrent focus
45 230-45 919 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003284655#DR013_RS09195Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1128944
Simplified PFAM architecture for RROC_1128944
PFAM domain coverage: 184 / 232 aa (79.3%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-114] | Trans_reg_C[149-224]
- Domain count: 2
- Matched identifier: RROC_1128944
- Positioned domains: Response_reg 7-114 ; Response_reg 7-114 ; Trans_reg_C 149-224 ; Trans_reg_C 149-224
Cluster members and taxonomy
Representative gene: GCF_003284655#DR013_RS09195
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032480055
AssemblyASM3248005v1 · Contighaploid
Genome composition3 610 104 bp · 30,0% GCClostridium sp.
Signal transduction countsGenes 75 · HK 39 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key