1 Response_reg#1
137-254 aa · 118 aa · 45.6% of protein
Raw token
Response_reg:137:2.22e-27:254:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E7D95_RS05940
Response regulator, unclassified
Clostridium sp. · GCF_032480055
ClassRRTypeunclassifiedLength259 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_032480055#E7D95_RS05940Stable P2CS identifier used across views.
GenomeGCF_032480055Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length259 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage118 / 259 aa (45.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa259 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:137:2.22e-27:254:118:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_032480055::NZ_JAWEVO010000009.1::G00014
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span7610-11884Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE7D95_05940RefSeq proteinWP_049180083.1
Context group ID
GCF_032480055::NZ_JAWEVO010000009.1::G00014Context members
E7D95_RS05940E7D95_RS05950E7D95_RS05955
Partner locus tags
E7D95_RS05940E7D95_RS05950E7D95_RS05955
Partner old locus tags
E7D95_05940E7D95_05950E7D95_05955
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_049180083.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE7D95_RS05940Primary locus identifier stored in the genes table.
Old locus tagE7D95_05940Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWEVO010000009.1Sequence record reported by the local genomic context database.
Genomic interval7 610-8 389 nt780 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span7 610-11 884 ntGCF_032480055::NZ_JAWEVO010000009.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032480055::NZ_JAWEVO010000009.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWEVO010000009.1All displayed genes belong to this local TCS context.
Neighborhood span7 610-11 884 nt4 275 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 610 nt11 884 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
E7D95_RS05940GCF_032480055#E7D95_RS05940
RRunclassifiedCurrent focus
7 610-8 389 nt · Reverse (-)
E7D95_RS05950GCF_032480055#E7D95_RS05950
HKHybrid
8 776-10 869 nt · Reverse (-)
E7D95_RS05955GCF_032480055#E7D95_RS05955
RRRpfG
10 853-11 884 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003284655#DR013_RS03880Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0658382
Simplified PFAM architecture for RROC_0658382
PFAM domain coverage: 117 / 259 aa (45.2%)
1 aa259 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[137-253]
- Domain count: 1
- Matched identifier: RROC_0658382
- Positioned domains: Response_reg 137-253 ; Response_reg 137-253
Cluster members and taxonomy
Representative gene: GCF_003284655#DR013_RS03880
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032480055
AssemblyASM3248005v1 · Contighaploid
Genome composition3 610 104 bp · 30,0% GCClostridium sp.
Signal transduction countsGenes 75 · HK 39 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key