1 Response_reg#1
5-117 aa · 113 aa · 53.6% of protein
Raw token
Response_reg:5:1.23e-29:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E6947_RS06170
Response regulator NarL family
Clostridium sp. · GCF_032473555
ClassRRTypeNarLLength211 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_032473555#E6947_RS06170Stable P2CS identifier used across views.
GenomeGCF_032473555Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length211 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 211 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa211 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
151-204 aa · 54 aa · 25.6% of protein
Raw token
HTH_LUXR:151:2.94e-20:204:54:58- Raw architecture: Response_reg:5:1.23e-29:117:113:111#HTH_LUXR:151:2.94e-20:204:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_032473555::NZ_JAWEEI010000003.1::G00015
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span394018-394653Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE6947_06165RefSeq proteinWP_027098414.1
Context group ID
GCF_032473555::NZ_JAWEEI010000003.1::G00015Context members
E6947_RS06170
Partner locus tags
E6947_RS06170
Partner old locus tags
E6947_06165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_027098414.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE6947_RS06170Primary locus identifier stored in the genes table.
Old locus tagE6947_06165Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWEEI010000003.1Sequence record reported by the local genomic context database.
Genomic interval394 018-394 653 nt636 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span394 018-394 653 ntGCF_032473555::NZ_JAWEEI010000003.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032473555::NZ_JAWEEI010000003.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWEEI010000003.1All displayed genes belong to this local TCS context.
Neighborhood span394 018-394 653 nt636 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
394 018 nt394 653 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E6947_RS06170GCF_032473555#E6947_RS06170
RRNarLCurrent focus
394 018-394 653 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS0109770Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2004249
Simplified PFAM architecture for RROC_2004249
PFAM domain coverage: 167 / 211 aa (79.1%)
1 aa211 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[5-116] | GerE[150-204]
- Domain count: 2
- Matched identifier: RROC_2004249
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; GerE 150-204 ; GerE 150-204
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS0109770
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032473555
AssemblyASM3247355v1 · Contighaploid
Genome composition3 524 917 bp · 29,5% GCClostridium sp.
Signal transduction countsGenes 70 · HK 38 · RR 30CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key