1 HisKA#1
321-383 aa · 63 aa · 9.1% of protein
Raw token
HisKA:321:0.000000000000244:383:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E6947_RS00400
Histidine kinase, Hybrid
Clostridium sp. · GCF_032473555
ClassHKTypeHybridLength695 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_032473555#E6947_RS00400Stable P2CS identifier used across views.
GenomeGCF_032473555Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length695 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage299 / 695 aa (43.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa695 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
435-552 aa · 118 aa · 17.0% of protein
Raw token
HATPase_c:435:1.29e-27:552:118:1093 Response_reg#3
575-692 aa · 118 aa · 17.0% of protein
Raw token
Response_reg:575:4.39e-18:692:119:111- Raw architecture: HisKA:321:0.000000000000244:383:63:64#HATPase_c:435:1.29e-27:552:118:109#Response_reg:575:4.39e-18:692:119:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_032473555::NZ_JAWEEI010000001.1::G00001
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span90751-95019Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE6947_00400RefSeq proteinWP_055183523.1
Context group ID
GCF_032473555::NZ_JAWEEI010000001.1::G00001Context members
E6947_RS00395E6947_RS00400E6947_RS00410
Partner locus tags
E6947_RS00395E6947_RS00400E6947_RS00410
Partner old locus tags
E6947_00395E6947_00400E6947_00410
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055183523.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE6947_RS00400Primary locus identifier stored in the genes table.
Old locus tagE6947_00400Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWEEI010000001.1Sequence record reported by the local genomic context database.
Genomic interval91 766-93 853 nt2 088 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span90 751-95 019 ntGCF_032473555::NZ_JAWEEI010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032473555::NZ_JAWEEI010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWEEI010000001.1All displayed genes belong to this local TCS context.
Neighborhood span90 751-95 019 nt4 269 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
90 751 nt95 019 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
E6947_RS00395GCF_032473555#E6947_RS00395
RRRpfG
90 751-91 782 nt · Forward (+)
E6947_RS00400GCF_032473555#E6947_RS00400
HKHybridCurrent focus
91 766-93 853 nt · Forward (+)
E6947_RS00410GCF_032473555#E6947_RS00410
RRunclassified
94 240-95 019 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406515#ARA43_RS01640Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0780050
Simplified PFAM architecture for HKOC_0780050
PFAM domain coverage: 297 / 695 aa (42.7%)
1 aa695 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[322-384] | HATPase_c[435-551] | Response_reg[575-691]
- Domain count: 3
- Matched identifier: HKOC_0780050
- Positioned domains: HisKA 322-384 ; HATPase_c 435-551 ; Response_reg 575-691
Cluster members and taxonomy
Representative gene: GCF_001406515#ARA43_RS01640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032473555
AssemblyASM3247355v1 · Contighaploid
Genome composition3 524 917 bp · 29,5% GCClostridium sp.
Signal transduction countsGenes 70 · HK 38 · RR 30CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key