1 Response_reg#1
5-117 aa · 113 aa · 53.6% of protein
Raw token
Response_reg:5:1.23e-29:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G594_RS0109770
Response regulator NarL family
Clostridium paraputrificum AGR2156 · GCF_000424025
ClassRRTypeNarLLength211 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000424025#G594_RS0109770Stable P2CS identifier used across views.
GenomeGCF_000424025Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length211 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 211 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa211 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
151-204 aa · 54 aa · 25.6% of protein
Raw token
HTH_LUXR:151:2.94e-20:204:54:58- Raw architecture: Response_reg:5:1.23e-29:117:113:111#HTH_LUXR:151:2.94e-20:204:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000424025::NZ_AUJC01000008.1::G00030
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span137234-137869Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424025::NZ_AUJC01000008.1::G00030Context members
G594_RS0109770
Partner locus tags
G594_RS0109770
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_027098414.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG594_RS0109770Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AUJC01000008.1Sequence record reported by the local genomic context database.
Genomic interval137 234-137 869 nt636 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span137 234-137 869 ntGCF_000424025::NZ_AUJC01000008.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424025::NZ_AUJC01000008.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AUJC01000008.1All displayed genes belong to this local TCS context.
Neighborhood span137 234-137 869 nt636 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
137 234 nt137 869 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G594_RS0109770GCF_000424025#G594_RS0109770
RRNarLCurrent focus
137 234-137 869 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS0109770The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2004249
Simplified PFAM architecture for RROC_2004249
PFAM domain coverage: 167 / 211 aa (79.1%)
1 aa211 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[5-116] | GerE[150-204]
- Domain count: 2
- Matched identifier: RROC_2004249
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; GerE 150-204 ; GerE 150-204
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS0109770
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 689 · GCF_000424025
AssemblyASM42402v1 · Scaffoldreference genome · haploid
Genome composition3 561 289 bp · 29,5% GCClostridium paraputrificum AGR2156
Signal transduction countsGenes 72 · HK 38 · RR 32CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key