1 Response_reg#1
4-115 aa · 112 aa · 21.7% of protein
Raw token
Response_reg:4:9.83e-27:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RO865_RS11440
Response regulator, unclassified
Blautia faecis · GCF_032142815
ClassRRTypeunclassifiedLength515 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032142815#RO865_RS11440Stable P2CS identifier used across views.
GenomeGCF_032142815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length515 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage181 / 515 aa (35.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa515 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
429-462 aa · 34 aa · 6.6% of protein
Raw token
HTH_AraC:429:0.00000073:462:34:423 HTH_AraC#3
477-511 aa · 35 aa · 6.8% of protein
Raw token
HTH_AraC:477:0.000000174:511:35:42- Raw architecture: Response_reg:4:9.83e-27:115:112:111#HTH_AraC:429:0.00000073:462:34:42#HTH_AraC:477:0.000000174:511:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032142815::NZ_JAVSND010000006.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span176413-179859Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRO865_11440RefSeq proteinWP_313719182.1
Context group ID
GCF_032142815::NZ_JAVSND010000006.1::G00046Context members
RO865_RS11435RO865_RS11440
Partner locus tags
RO865_RS11435RO865_RS11440
Partner old locus tags
RO865_11435RO865_11440
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_313719182.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRO865_RS11440Primary locus identifier stored in the genes table.
Old locus tagRO865_11440Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAVSND010000006.1Sequence record reported by the local genomic context database.
Genomic interval178 312-179 859 nt1 548 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span176 413-179 859 ntGCF_032142815::NZ_JAVSND010000006.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032142815::NZ_JAVSND010000006.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAVSND010000006.1All displayed genes belong to this local TCS context.
Neighborhood span176 413-179 859 nt3 447 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
176 413 nt179 859 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RO865_RS11435GCF_032142815#RO865_RS11435
HKClassic
176 413-178 242 nt · Reverse (-)
RO865_RS11440GCF_032142815#RO865_RS11440
RRunclassifiedCurrent focus
178 312-179 859 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032142815#RO865_RS11440The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0137532
Simplified PFAM architecture for RROC_0137532
PFAM domain coverage: 301 / 515 aa (58.4%)
1 aa515 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-115] | GGDEF_2[167-277] | HTH_18[435-512]
- Domain count: 3
- Matched identifier: RROC_0137532
- Positioned domains: Response_reg 4-115 ; GGDEF_2 167-277 ; HTH_18 435-512
Cluster members and taxonomy
Representative gene: GCF_032142815#RO865_RS11440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_032142815
AssemblyASM3214281v1 · Scaffoldhaploid
Genome composition4 808 166 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 129 · HK 65 · RR 63CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key