1 Response_reg#1
6-116 aa · 111 aa · 31.2% of protein
Raw token
Response_reg:6:3.29e-27:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RO865_RS09835
Response regulator, unclassified
Blautia faecis · GCF_032142815
ClassRRTypeunclassifiedLength356 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032142815#RO865_RS09835Stable P2CS identifier used across views.
GenomeGCF_032142815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length356 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage190 / 356 aa (53.4%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa356 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
260-301 aa · 42 aa · 11.8% of protein
Raw token
HTH_AraC:260:0.0000002:301:42:423 HTH_AraC#3
312-348 aa · 37 aa · 10.4% of protein
Raw token
HTH_AraC:312:0.0000000441:348:37:42- Raw architecture: Response_reg:6:3.29e-27:116:111:111#HTH_AraC:260:0.0000002:301:42:42#HTH_AraC:312:0.0000000441:348:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032142815::NZ_JAVSND010000005.1::G00036
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span52043-54881Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRO865_09835RefSeq proteinWP_313718854.1
Context group ID
GCF_032142815::NZ_JAVSND010000005.1::G00036Context members
RO865_RS09830RO865_RS09835
Partner locus tags
RO865_RS09830RO865_RS09835
Partner old locus tags
RO865_09830RO865_09835
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_313718854.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRO865_RS09835Primary locus identifier stored in the genes table.
Old locus tagRO865_09835Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAVSND010000005.1Sequence record reported by the local genomic context database.
Genomic interval53 811-54 881 nt1 071 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span52 043-54 881 ntGCF_032142815::NZ_JAVSND010000005.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032142815::NZ_JAVSND010000005.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAVSND010000005.1All displayed genes belong to this local TCS context.
Neighborhood span52 043-54 881 nt2 839 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
52 043 nt54 881 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RO865_RS09830GCF_032142815#RO865_RS09830
HKClassic
52 043-53 776 nt · Forward (+)
RO865_RS09835GCF_032142815#RO865_RS09835
RRunclassifiedCurrent focus
53 811-54 881 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032142815#RO865_RS09835The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0468031
Simplified PFAM architecture for RROC_0468031
PFAM domain coverage: 189 / 356 aa (53.1%)
1 aa356 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[273-349]
- Domain count: 2
- Matched identifier: RROC_0468031
- Positioned domains: Response_reg 5-116 ; HTH_18 273-349
Cluster members and taxonomy
Representative gene: GCF_032142815#RO865_RS09835
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_032142815
AssemblyASM3214281v1 · Scaffoldhaploid
Genome composition4 808 166 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 129 · HK 65 · RR 63CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key