1 Response_reg#1
6-122 aa · 117 aa · 48.5% of protein
Raw token
Response_reg:6:3.2e-30:122:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RO865_RS04040
Response regulator, unclassified
Blautia faecis · GCF_032142815
ClassRRTypeunclassifiedLength241 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032142815#RO865_RS04040Stable P2CS identifier used across views.
GenomeGCF_032142815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 241 aa (79.7%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
155-191 aa · 37 aa · 15.4% of protein
Raw token
HTH_AraC:155:0.0000158:191:37:423 HTH_AraC#3
204-241 aa · 38 aa · 15.8% of protein
Raw token
HTH_AraC:204:0.00000000732:241:38:42- Raw architecture: Response_reg:6:3.2e-30:122:117:111#HTH_AraC:155:0.0000158:191:37:42#HTH_AraC:204:0.00000000732:241:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032142815::NZ_JAVSND010000002.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span178042-180644Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRO865_04040RefSeq proteinWP_173717992.1
Context group ID
GCF_032142815::NZ_JAVSND010000002.1::G00014Context members
RO865_RS04035RO865_RS04040
Partner locus tags
RO865_RS04035RO865_RS04040
Partner old locus tags
RO865_04035RO865_04040
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173717992.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRO865_RS04040Primary locus identifier stored in the genes table.
Old locus tagRO865_04040Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAVSND010000002.1Sequence record reported by the local genomic context database.
Genomic interval179 919-180 644 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span178 042-180 644 ntGCF_032142815::NZ_JAVSND010000002.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032142815::NZ_JAVSND010000002.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAVSND010000002.1All displayed genes belong to this local TCS context.
Neighborhood span178 042-180 644 nt2 603 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
178 042 nt180 644 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RO865_RS04035GCF_032142815#RO865_RS04035
HKClassic
178 042-179 922 nt · Forward (+)
RO865_RS04040GCF_032142815#RO865_RS04040
RRunclassifiedCurrent focus
179 919-180 644 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300845#G5B24_RS02410Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0870232
Simplified PFAM architecture for RROC_0870232
PFAM domain coverage: 193 / 241 aa (80.1%)
1 aa241 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[6-119] | HTH_18[163-241]
- Domain count: 2
- Matched identifier: RROC_0870232
- Positioned domains: Response_reg 6-119 ; HTH_18 163-241
Cluster members and taxonomy
Representative gene: GCF_013300845#G5B24_RS02410
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_032142815
AssemblyASM3214281v1 · Scaffoldhaploid
Genome composition4 808 166 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 129 · HK 65 · RR 63CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key