1 Response_reg#1
6-122 aa · 117 aa · 48.5% of protein
Raw token
Response_reg:6:3.2e-30:122:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5B24_RS02410
Response regulator, unclassified
Blautia glucerasea · GCF_013300845
ClassRRTypeunclassifiedLength241 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013300845#G5B24_RS02410Stable P2CS identifier used across views.
GenomeGCF_013300845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 241 aa (79.7%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
155-191 aa · 37 aa · 15.4% of protein
Raw token
HTH_AraC:155:0.0000158:191:37:423 HTH_AraC#3
204-241 aa · 38 aa · 15.8% of protein
Raw token
HTH_AraC:204:0.00000000732:241:38:42- Raw architecture: Response_reg:6:3.2e-30:122:117:111#HTH_AraC:155:0.0000158:191:37:42#HTH_AraC:204:0.00000000732:241:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013300845::NZ_JAAIUB010000004.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16311-18913Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5B24_02400RefSeq proteinWP_173717992.1
Context group ID
GCF_013300845::NZ_JAAIUB010000004.1::G00046Context members
G5B24_RS02405G5B24_RS02410
Partner locus tags
G5B24_RS02405G5B24_RS02410
Partner old locus tags
G5B24_02395G5B24_02400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173717992.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5B24_RS02410Primary locus identifier stored in the genes table.
Old locus tagG5B24_02400Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIUB010000004.1Sequence record reported by the local genomic context database.
Genomic interval18 188-18 913 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span16 311-18 913 ntGCF_013300845::NZ_JAAIUB010000004.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300845::NZ_JAAIUB010000004.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIUB010000004.1All displayed genes belong to this local TCS context.
Neighborhood span16 311-18 913 nt2 603 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 311 nt18 913 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5B24_RS02405GCF_013300845#G5B24_RS02405
HKClassic
16 311-18 191 nt · Forward (+)
G5B24_RS02410GCF_013300845#G5B24_RS02410
RRunclassifiedCurrent focus
18 188-18 913 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300845#G5B24_RS02410The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0870232
Simplified PFAM architecture for RROC_0870232
PFAM domain coverage: 193 / 241 aa (80.1%)
1 aa241 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[6-119] | HTH_18[163-241]
- Domain count: 2
- Matched identifier: RROC_0870232
- Positioned domains: Response_reg 6-119 ; HTH_18 163-241
Cluster members and taxonomy
Representative gene: GCF_013300845#G5B24_RS02410
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 536 633 · GCF_013300845
AssemblyASM1330084v1 · Contigreference genome · haploid
Genome composition4 398 197 bp · 42,5% GCBlautia glucerasea
Signal transduction countsGenes 130 · HK 65 · RR 64CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key