1 HAMP#1
288-357 aa · 70 aa · 12.0% of protein
Raw token
HAMP:288:0.00000000215:357:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QSJ43_RS03510
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_030268445
ClassHKTypeClassicLength582 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030268445#QSJ43_RS03510Stable P2CS identifier used across views.
GenomeGCF_030268445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length582 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage251 / 582 aa (43.1%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa582 aa
Domain-by-domain annotation3 items
2 His_kinase#2
372-452 aa · 81 aa · 13.9% of protein
Raw token
His_kinase:372:3.37e-22:452:81:803 HATPase_c#3
475-574 aa · 100 aa · 17.2% of protein
Raw token
HATPase_c:475:0.0000000000000137:574:105:109- Raw architecture: HAMP:288:0.00000000215:357:70:69#His_kinase:372:3.37e-22:452:81:80#HATPase_c:475:0.0000000000000137:574:105:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030268445::NZ_BSQR01000003.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span201932-204738Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRgna01_07010RefSeq proteinWP_225084099.1
Context group ID
GCF_030268445::NZ_BSQR01000003.1::G00010Context members
QSJ43_RS03510QSJ43_RS03515
Partner locus tags
QSJ43_RS03510QSJ43_RS03515
Partner old locus tags
Rgna01_07010Rgna01_07020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_225084099.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQSJ43_RS03510Primary locus identifier stored in the genes table.
Old locus tagRgna01_07010Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BSQR01000003.1Sequence record reported by the local genomic context database.
Genomic interval201 932-203 680 nt1 749 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span201 932-204 738 ntGCF_030268445::NZ_BSQR01000003.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030268445::NZ_BSQR01000003.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BSQR01000003.1All displayed genes belong to this local TCS context.
Neighborhood span201 932-204 738 nt2 807 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
201 932 nt204 738 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QSJ43_RS03510GCF_030268445#QSJ43_RS03510
HKClassicCurrent focus
201 932-203 680 nt · Forward (+)
QSJ43_RS03515GCF_030268445#QSJ43_RS03515
RRunclassified
203 668-204 738 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020181455#LCQ72_RS13840Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1154322
Simplified PFAM architecture for HKOC_1154322
PFAM domain coverage: 181 / 582 aa (31.1%)
1 aa582 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[372-451] | HATPase_c[473-573]
- Domain count: 2
- Matched identifier: HKOC_1154322
- Positioned domains: His_kinase 372-451 ; HATPase_c 473-573
Cluster members and taxonomy
Representative gene: GCF_020181455#LCQ72_RS13840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_030268445
AssemblyASM3026844v1 · Scaffoldhaploid
Genome composition3 609 867 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 89 · HK 41 · RR 47CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key