1 HAMP#1
288-357 aa · 70 aa · 12.0% of protein
Raw token
HAMP:288:0.00000000215:357:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LCQ72_RS13840
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_020181455
ClassHKTypeClassicLength582 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020181455#LCQ72_RS13840Stable P2CS identifier used across views.
GenomeGCF_020181455Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length582 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage251 / 582 aa (43.1%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa582 aa
Domain-by-domain annotation3 items
2 His_kinase#2
372-452 aa · 81 aa · 13.9% of protein
Raw token
His_kinase:372:3.37e-22:452:81:803 HATPase_c#3
475-574 aa · 100 aa · 17.2% of protein
Raw token
HATPase_c:475:0.0000000000000137:574:105:109- Raw architecture: HAMP:288:0.00000000215:357:70:69#His_kinase:372:3.37e-22:452:81:80#HATPase_c:475:0.0000000000000137:574:105:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020181455::NZ_CP084014.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2812463-2815269Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLCQ72_13840RefSeq proteinWP_225084099.1
Context group ID
GCF_020181455::NZ_CP084014.1::G00045Context members
LCQ72_RS13840LCQ72_RS13845
Partner locus tags
LCQ72_RS13840LCQ72_RS13845
Partner old locus tags
LCQ72_13840LCQ72_13845
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_225084099.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLCQ72_RS13840Primary locus identifier stored in the genes table.
Old locus tagLCQ72_13840Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP084014.1Sequence record reported by the local genomic context database.
Genomic interval2 812 463-2 814 211 nt1 749 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 812 463-2 815 269 ntGCF_020181455::NZ_CP084014.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020181455::NZ_CP084014.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP084014.1All displayed genes belong to this local TCS context.
Neighborhood span2 812 463-2 815 269 nt2 807 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 812 463 nt2 815 269 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LCQ72_RS13840GCF_020181455#LCQ72_RS13840
HKClassicCurrent focus
2 812 463-2 814 211 nt · Forward (+)
LCQ72_RS13845GCF_020181455#LCQ72_RS13845
RRunclassified
2 814 199-2 815 269 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020181455#LCQ72_RS13840The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1154322
Simplified PFAM architecture for HKOC_1154322
PFAM domain coverage: 181 / 582 aa (31.1%)
1 aa582 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[372-451] | HATPase_c[473-573]
- Domain count: 2
- Matched identifier: HKOC_1154322
- Positioned domains: His_kinase 372-451 ; HATPase_c 473-573
Cluster members and taxonomy
Representative gene: GCF_020181455#LCQ72_RS13840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_020181455
AssemblyASM2018145v1 · Complete Genomehaploid
Genome composition3 757 469 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 89 · HK 41 · RR 47CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key