1 Response_reg#1
12-117 aa · 106 aa · 45.5% of protein
Raw token
Response_reg:12:2.47e-29:117:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QSJ43_RS00035
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_030268445
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030268445#QSJ43_RS00035Stable P2CS identifier used across views.
GenomeGCF_030268445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 233 aa (78.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 33.0% of protein
Raw token
Trans_reg_C:153:5.6e-29:229:77:77- Raw architecture: Response_reg:12:2.47e-29:117:107:111#Trans_reg_C:153:5.6e-29:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030268445::NZ_BSQR01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4120-6205Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRgna01_00060RefSeq proteinWP_202184073.1
Context group ID
GCF_030268445::NZ_BSQR01000001.1::G00002Context members
QSJ43_RS00035QSJ43_RS00040
Partner locus tags
QSJ43_RS00035QSJ43_RS00040
Partner old locus tags
Rgna01_00060Rgna01_00070
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_202184073.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQSJ43_RS00035Primary locus identifier stored in the genes table.
Old locus tagRgna01_00060Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BSQR01000001.1Sequence record reported by the local genomic context database.
Genomic interval4 120-4 821 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 120-6 205 ntGCF_030268445::NZ_BSQR01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030268445::NZ_BSQR01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BSQR01000001.1All displayed genes belong to this local TCS context.
Neighborhood span4 120-6 205 nt2 086 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 120 nt6 205 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QSJ43_RS00035GCF_030268445#QSJ43_RS00035
RROmpRCurrent focus
4 120-4 821 nt · Forward (+)
QSJ43_RS00040GCF_030268445#QSJ43_RS00040
HKClassic
4 826-6 205 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015561245#I2I25_RS10320Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1097184
Simplified PFAM architecture for RROC_1097184
PFAM domain coverage: 181 / 233 aa (77.7%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[12-117] | Trans_reg_C[155-229]
- Domain count: 2
- Matched identifier: RROC_1097184
- Positioned domains: Response_reg 12-117 ; Trans_reg_C 155-229
Cluster members and taxonomy
Representative gene: GCF_015561245#I2I25_RS10320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_030268445
AssemblyASM3026844v1 · Scaffoldhaploid
Genome composition3 609 867 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 89 · HK 41 · RR 47CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key