1 Response_reg#1
4-112 aa · 109 aa · 66.5% of protein
Raw token
Response_reg:4:8.55e-32:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PIG55_RS04560
Response regulator, CheY family
Bifidobacterium catenulatum · GCF_029340025
ClassRRTypeCheYLength164 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_029340025#PIG55_RS04560Stable P2CS identifier used across views.
GenomeGCF_029340025Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length164 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage109 / 164 aa (66.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa164 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:8.55e-32:112:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_029340025::NZ_JARJNN010000006.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-491Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPIG55_04570RefSeq proteinWP_276342142.1
Context group ID
GCF_029340025::NZ_JARJNN010000006.1::G00007Context members
PIG55_RS04560
Partner locus tags
PIG55_RS04560
Partner old locus tags
PIG55_04570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276342142.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPIG55_RS04560Primary locus identifier stored in the genes table.
Old locus tagPIG55_04570Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARJNN010000006.1Sequence record reported by the local genomic context database.
Genomic interval1-491 nt491 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-491 ntGCF_029340025::NZ_JARJNN010000006.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029340025::NZ_JARJNN010000006.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARJNN010000006.1All displayed genes belong to this local TCS context.
Neighborhood span1-491 nt491 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt491 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PIG55_RS04560GCF_029340025#PIG55_RS04560
RRCheYCurrent focus
1-491 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_029340025#PIG55_RS04560The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2204507
Simplified PFAM architecture for RROC_2204507
PFAM domain coverage: 108 / 164 aa (65.9%)
1 aa164 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-111]
- Domain count: 1
- Matched identifier: RROC_2204507
- Positioned domains: Response_reg 4-111
Cluster members and taxonomy
Representative gene: GCF_029340025#PIG55_RS04560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 686 · GCF_029340025
AssemblyRC93_19017_UC · Contighaploid
Genome composition2 056 238 bp · 56,0% GCBifidobacterium catenulatum
Signal transduction countsGenes 21 · HK 9 · RR 10CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key