1 Response_reg#1
4-113 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:4:2.23e-37:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PIG55_RS01535
Response regulator OmpR family
Bifidobacterium catenulatum · GCF_029340025
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_029340025#PIG55_RS01535Stable P2CS identifier used across views.
GenomeGCF_029340025Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:153:2.72e-33:229:77:77- Raw architecture: Response_reg:4:2.23e-37:113:111:111#Trans_reg_C:153:2.72e-33:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_029340025::NZ_JARJNN010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span314229-316362Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPIG55_01540RefSeq proteinWP_276341820.1
Context group ID
GCF_029340025::NZ_JARJNN010000001.1::G00002Context members
PIG55_RS01535PIG55_RS01540
Partner locus tags
PIG55_RS01535PIG55_RS01540
Partner old locus tags
PIG55_01540PIG55_01545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276341820.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPIG55_RS01535Primary locus identifier stored in the genes table.
Old locus tagPIG55_01540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARJNN010000001.1Sequence record reported by the local genomic context database.
Genomic interval314 229-314 933 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span314 229-316 362 ntGCF_029340025::NZ_JARJNN010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029340025::NZ_JARJNN010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARJNN010000001.1All displayed genes belong to this local TCS context.
Neighborhood span314 229-316 362 nt2 134 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
314 229 nt316 362 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PIG55_RS01535GCF_029340025#PIG55_RS01535
RROmpRCurrent focus
314 229-314 933 nt · Reverse (-)
PIG55_RS01540GCF_029340025#PIG55_RS01540
HKClassic
315 016-316 362 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_029340025#PIG55_RS01535The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1067037
Simplified PFAM architecture for RROC_1067037
PFAM domain coverage: 184 / 234 aa (78.6%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[155-228]
- Domain count: 2
- Matched identifier: RROC_1067037
- Positioned domains: Response_reg 4-113 ; Trans_reg_C 155-228
Cluster members and taxonomy
Representative gene: GCF_029340025#PIG55_RS01535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 686 · GCF_029340025
AssemblyRC93_19017_UC · Contighaploid
Genome composition2 056 238 bp · 56,0% GCBifidobacterium catenulatum
Signal transduction countsGenes 21 · HK 9 · RR 10CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key