1 PAS#1
80-194 aa · 115 aa · 24.9% of protein
Raw token
PAS:80:0.0000000000000422:194:124:113P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P2R17_RS24275
Probable incomplete histidine kinase
Bacillus sp. Cr_R3 · GCF_029222485
ClassHKTypeClassicLength461 aaTM0ValidatedNoCompleteNoContextNo local context
Gene IDGCF_029222485#P2R17_RS24275Stable P2CS identifier used across views.
Selected clusterNo clusterThis gene is not linked to a local CD-HIT cluster.
External referencesMIST4 P2R17_RS24275MIST4
Domain signature
Compact overview inferred from the domain field
PASPAS_4HisKA
Protein length461 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage287 / 461 aa (62.3%)Merged over positioned domains only.
Domain description1 PAS,1 PAS_4,1 HisKASummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa461 aa
Domain-by-domain annotation3 items
2 PAS_4#2
223-332 aa · 110 aa · 23.9% of protein
Raw token
PAS_4:223:0.000000000112:332:112:1103 HisKA#3
349-410 aa · 62 aa · 13.4% of protein
Raw token
HisKA:349:0.0000000000000104:410:62:64- Raw architecture: PAS:80:0.0000000000000422:194:124:113#PAS_4:223:0.000000000112:332:112:110#HisKA:349:0.0000000000000104:410:62:64
- Domain description: 1 PAS,1 PAS_4,1 HisKA
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: No
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
No local TCS context mapping is available for this gene.
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No external UniProt / GO / PubMed mapping is available for this gene.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP2R17_RS24275Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconUnavailableNo contig or replicon mapping is available for this gene.
Genomic intervalUnavailableNo start/end genomic coordinates are available for this gene.
StrandUnavailableStrand sign follows the local context database convention.
Local TCS group spanUnavailableNo grouped neighborhood span is available for this gene.
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
No local TCS neighborhood is available for this gene on this server.
Clusters
CD-HIT memberships and selected cluster details for the current gene class
No cluster membership available for this gene.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 031 022 · GCF_029222485
AssemblyASM2922248v1 · Contighaploid
Genome composition5 951 258 bp · 35,0% GCBacillus sp. Cr_R3
Signal transduction countsGenes 127 · HK 69 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key