1 Response_reg#1
9-121 aa · 113 aa · 50.4% of protein
Raw token
Response_reg:9:3.1e-32:121:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P2R17_RS02765
Response regulator NarL family
Bacillus sp. Cr_R3 · GCF_029222485
ClassRRTypeNarLLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_029222485#P2R17_RS02765Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 224 aa (76.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
153-210 aa · 58 aa · 25.9% of protein
Raw token
HTH_LUXR:153:3.01e-23:210:58:58- Raw architecture: Response_reg:9:3.1e-32:121:113:111#HTH_LUXR:153:3.01e-23:210:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_029222485::NZ_JARHXH010000010.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span177861-180021Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP2R17_02780RefSeq proteinWP_063223190.1
Context group ID
GCF_029222485::NZ_JARHXH010000010.1::G00001Context members
P2R17_RS02765P2R17_RS02770
Partner locus tags
P2R17_RS02765P2R17_RS02770
Partner old locus tags
P2R17_02780P2R17_02785
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_063223190.1Primary protein accession used for annex mappings.
UniProt accessionA0A2B0XL86Primary UniProt accession resolved in the annex database.
UniProt IDA0A2B0XL86_BACANDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP2R17_RS02765Primary locus identifier stored in the genes table.
Old locus tagP2R17_02780Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARHXH010000010.1Sequence record reported by the local genomic context database.
Genomic interval177 861-178 535 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span177 861-180 021 ntGCF_029222485::NZ_JARHXH010000010.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029222485::NZ_JARHXH010000010.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARHXH010000010.1All displayed genes belong to this local TCS context.
Neighborhood span177 861-180 021 nt2 161 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
177 861 nt180 021 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P2R17_RS02765GCF_029222485#P2R17_RS02765
RRNarLCurrent focus
177 861-178 535 nt · Reverse (-)
P2R17_RS02770GCF_029222485#P2R17_RS02770
HKClassic
178 498-180 021 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001619425#B4082_RS15375Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1537093
Simplified PFAM architecture for RROC_1537093
PFAM domain coverage: 169 / 224 aa (75.4%)
1 aa224 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-121] | GerE[155-210]
- Domain count: 2
- Matched identifier: RROC_1537093
- Positioned domains: Response_reg 9-121 ; Response_reg 9-121 ; GerE 155-210 ; GerE 155-210
Cluster members and taxonomy
Representative gene: GCF_001619425#B4082_RS15375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 031 022 · GCF_029222485
AssemblyASM2922248v1 · Contighaploid
Genome composition5 951 258 bp · 35,0% GCBacillus sp. Cr_R3
Signal transduction countsGenes 127 · HK 69 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key