1 HAMP#1
199-268 aa · 70 aa · 13.8% of protein
Raw token
HAMP:199:0.0000000000000269:268:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P2R17_RS02770
Histidine kinase, Classic
Bacillus sp. Cr_R3 · GCF_029222485
ClassHKTypeClassicLength507 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_029222485#P2R17_RS02770Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKA_3HATPase_c
Protein length507 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage223 / 507 aa (44.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa507 aa
Domain-by-domain annotation3 items
2 HisKA_3#2
281-348 aa · 68 aa · 13.4% of protein
Raw token
HisKA_3:281:6.75e-18:348:68:683 HATPase_c#3
387-471 aa · 85 aa · 16.8% of protein
Raw token
HATPase_c:387:0.0000000000000249:471:101:109- Raw architecture: HAMP:199:0.0000000000000269:268:70:69#HisKA_3:281:6.75e-18:348:68:68#HATPase_c:387:0.0000000000000249:471:101:109
- Domain description: 1 HAMP,1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_029222485::NZ_JARHXH010000010.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span177861-180021Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP2R17_02785RefSeq proteinWP_275719020.1
Context group ID
GCF_029222485::NZ_JARHXH010000010.1::G00001Context members
P2R17_RS02765P2R17_RS02770
Partner locus tags
P2R17_RS02765P2R17_RS02770
Partner old locus tags
P2R17_02780P2R17_02785
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_275719020.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP2R17_RS02770Primary locus identifier stored in the genes table.
Old locus tagP2R17_02785Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARHXH010000010.1Sequence record reported by the local genomic context database.
Genomic interval178 498-180 021 nt1 524 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span177 861-180 021 ntGCF_029222485::NZ_JARHXH010000010.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029222485::NZ_JARHXH010000010.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARHXH010000010.1All displayed genes belong to this local TCS context.
Neighborhood span177 861-180 021 nt2 161 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
177 861 nt180 021 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P2R17_RS02765GCF_029222485#P2R17_RS02765
RRNarL
177 861-178 535 nt · Reverse (-)
P2R17_RS02770GCF_029222485#P2R17_RS02770
HKClassicCurrent focus
178 498-180 021 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_029222485#P2R17_RS02770The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1442525
Simplified PFAM architecture for HKOC_1442525
PFAM domain coverage: 205 / 507 aa (40.4%)
1 aa507 aa
HAMPHisKA_3HATPase_c
- Simplified architecture: HAMP + HisKA_3 + HATPase_c
- Raw architecture: HAMP[217-267] | HisKA_3[281-347] | HATPase_c[388-474]
- Domain count: 3
- Matched identifier: HKOC_1442525
- Positioned domains: HAMP 217-267 ; HisKA_3 281-347 ; HATPase_c 388-474
Cluster members and taxonomy
Representative gene: GCF_029222485#P2R17_RS02770
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 031 022 · GCF_029222485
AssemblyASM2922248v1 · Contighaploid
Genome composition5 951 258 bp · 35,0% GCBacillus sp. Cr_R3
Signal transduction countsGenes 127 · HK 69 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key