1 HisKA#1
205-269 aa · 65 aa · 15.4% of protein
Raw token
HisKA:205:3.29e-16:269:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P2R17_RS18860
Histidine kinase, Classic
Bacillus sp. Cr_R3 · GCF_029222485
ClassHKTypeClassicLength422 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_029222485#P2R17_RS18860Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length422 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 422 aa (40.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa422 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
309-412 aa · 104 aa · 24.6% of protein
Raw token
HATPase_c:309:5.9e-23:412:107:109- Raw architecture: HisKA:205:3.29e-16:269:65:64#HATPase_c:309:5.9e-23:412:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_029222485::NZ_JARHXH010000058.1::G00048
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span251302-252570Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP2R17_18915RefSeq proteinWP_063223498.1
Context group ID
GCF_029222485::NZ_JARHXH010000058.1::G00048Context members
P2R17_RS18860
Partner locus tags
P2R17_RS18860
Partner old locus tags
P2R17_18915
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_063223498.1Primary protein accession used for annex mappings.
UniProt accessionA0A2B0X6Y1Primary UniProt accession resolved in the annex database.
UniProt IDA0A2B0X6Y1_BACANDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP2R17_RS18860Primary locus identifier stored in the genes table.
Old locus tagP2R17_18915Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARHXH010000058.1Sequence record reported by the local genomic context database.
Genomic interval251 302-252 570 nt1 269 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span251 302-252 570 ntGCF_029222485::NZ_JARHXH010000058.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029222485::NZ_JARHXH010000058.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARHXH010000058.1All displayed genes belong to this local TCS context.
Neighborhood span251 302-252 570 nt1 269 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
251 302 nt252 570 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
P2R17_RS18860GCF_029222485#P2R17_RS18860
HKClassicCurrent focus
251 302-252 570 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001619425#B4082_RS17130Use this link to inspect the representative gene detail.
PFAM architecture5TM-5TMR_LYT + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2246984
Simplified PFAM architecture for HKOC_2246984
PFAM domain coverage: 324 / 422 aa (76.8%)
1 aa422 aa
5TM-5TMR_LYTHisKAHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + HisKA + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[22-178] | HisKA[205-267] | HATPase_c[310-413]
- Domain count: 3
- Matched identifier: HKOC_2246984
- Positioned domains: 5TM-5TMR_LYT 22-178 ; HisKA 205-267 ; HATPase_c 310-413
Cluster members and taxonomy
Representative gene: GCF_001619425#B4082_RS17130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 031 022 · GCF_029222485
AssemblyASM2922248v1 · Contighaploid
Genome composition5 951 258 bp · 35,0% GCBacillus sp. Cr_R3
Signal transduction countsGenes 127 · HK 69 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key