1 Response_reg#1
6-115 aa · 110 aa · 49.8% of protein
Raw token
Response_reg:6:5.35e-35:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P2R17_RS18525
Response regulator OmpR family
Bacillus sp. Cr_R3 · GCF_029222485
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_029222485#P2R17_RS18525Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 221 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-219 aa · 70 aa · 31.7% of protein
Raw token
Trans_reg_C:150:4.49e-30:219:75:77- Raw architecture: Response_reg:6:5.35e-35:115:111:111#Trans_reg_C:150:4.49e-30:219:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_029222485::NZ_JARHXH010000058.1::G00047
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span190509-192639Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP2R17_18580RefSeq proteinWP_063225074.1
Context group ID
GCF_029222485::NZ_JARHXH010000058.1::G00047Context members
P2R17_RS18520P2R17_RS18525
Partner locus tags
P2R17_RS18520P2R17_RS18525
Partner old locus tags
P2R17_18575P2R17_18580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_063225074.1Primary protein accession used for annex mappings.
UniProt accessionA0A2B0WZA3Primary UniProt accession resolved in the annex database.
UniProt IDA0A2B0WZA3_BACANDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP2R17_RS18525Primary locus identifier stored in the genes table.
Old locus tagP2R17_18580Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARHXH010000058.1Sequence record reported by the local genomic context database.
Genomic interval191 974-192 639 nt666 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span190 509-192 639 ntGCF_029222485::NZ_JARHXH010000058.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029222485::NZ_JARHXH010000058.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARHXH010000058.1All displayed genes belong to this local TCS context.
Neighborhood span190 509-192 639 nt2 131 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
190 509 nt192 639 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P2R17_RS18520GCF_029222485#P2R17_RS18520
HKClassic
190 509-191 981 nt · Reverse (-)
P2R17_RS18525GCF_029222485#P2R17_RS18525
RROmpRCurrent focus
191 974-192 639 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001619425#B4082_RS26970Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1683184
Simplified PFAM architecture for RROC_1683184
PFAM domain coverage: 178 / 221 aa (80.5%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[150-218]
- Domain count: 2
- Matched identifier: RROC_1683184
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 150-218 ; Trans_reg_C 150-218
Cluster members and taxonomy
Representative gene: GCF_001619425#B4082_RS26970
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 031 022 · GCF_029222485
AssemblyASM2922248v1 · Contighaploid
Genome composition5 951 258 bp · 35,0% GCBacillus sp. Cr_R3
Signal transduction countsGenes 127 · HK 69 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key