1 HAMP#1
174-243 aa · 70 aa · 14.5% of protein
Raw token
HAMP:174:7.96e-17:243:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P2R17_RS12375
Histidine kinase, Classic
Bacillus sp. Cr_R3 · GCF_029222485
ClassHKTypeClassicLength484 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_029222485#P2R17_RS12375Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length484 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 484 aa (50.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa484 aa
Domain-by-domain annotation3 items
2 HisKA#2
255-319 aa · 65 aa · 13.4% of protein
Raw token
HisKA:255:2.61e-16:319:65:643 HATPase_c#3
367-476 aa · 110 aa · 22.7% of protein
Raw token
HATPase_c:367:2.66e-30:476:110:109- Raw architecture: HAMP:174:7.96e-17:243:70:69#HisKA:255:2.61e-16:319:65:64#HATPase_c:367:2.66e-30:476:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_029222485::NZ_JARHXH010000039.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span37805-39950Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP2R17_12425RefSeq proteinWP_275719068.1
Context group ID
GCF_029222485::NZ_JARHXH010000039.1::G00031Context members
P2R17_RS12370P2R17_RS12375
Partner locus tags
P2R17_RS12370P2R17_RS12375
Partner old locus tags
P2R17_12420P2R17_12425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_275719068.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP2R17_RS12375Primary locus identifier stored in the genes table.
Old locus tagP2R17_12425Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARHXH010000039.1Sequence record reported by the local genomic context database.
Genomic interval38 496-39 950 nt1 455 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span37 805-39 950 ntGCF_029222485::NZ_JARHXH010000039.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029222485::NZ_JARHXH010000039.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARHXH010000039.1All displayed genes belong to this local TCS context.
Neighborhood span37 805-39 950 nt2 146 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
37 805 nt39 950 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P2R17_RS12370GCF_029222485#P2R17_RS12370
RROmpR
37 805-38 494 nt · Reverse (-)
P2R17_RS12375GCF_029222485#P2R17_RS12375
HKClassicCurrent focus
38 496-39 950 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_029222485#P2R17_RS12375The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1590026
Simplified PFAM architecture for HKOC_1590026
PFAM domain coverage: 225 / 484 aa (46.5%)
1 aa484 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[191-242] | HisKA[255-319] | HATPase_c[370-477]
- Domain count: 3
- Matched identifier: HKOC_1590026
- Positioned domains: HAMP 191-242 ; HisKA 255-319 ; HATPase_c 370-477
Cluster members and taxonomy
Representative gene: GCF_029222485#P2R17_RS12375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 031 022 · GCF_029222485
AssemblyASM2922248v1 · Contighaploid
Genome composition5 951 258 bp · 35,0% GCBacillus sp. Cr_R3
Signal transduction countsGenes 127 · HK 69 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key