1 GAF_3#1
301-386 aa · 86 aa · 14.1% of protein
Raw token
GAF_3:301:0.00000476:386:87:129P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P2R17_RS05310
Histidine kinase, Classic
Bacillus sp. Cr_R3 · GCF_029222485
ClassHKTypeClassicLength610 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_029222485#P2R17_RS05310Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAF_3HisKA_3HATPase_c
Protein length610 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage238 / 610 aa (39.0%)Merged over positioned domains only.
Domain description1 GAF_3,1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa610 aa
Domain-by-domain annotation3 items
2 HisKA_3#2
403-467 aa · 65 aa · 10.7% of protein
Raw token
HisKA_3:403:4.52e-17:467:65:683 HATPase_c#3
517-603 aa · 87 aa · 14.3% of protein
Raw token
HATPase_c:517:0.0000000000000537:603:97:109- Raw architecture: GAF_3:301:0.00000476:386:87:129#HisKA_3:403:4.52e-17:467:65:68#HATPase_c:517:0.0000000000000537:603:97:109
- Domain description: 1 GAF_3,1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_029222485::NZ_JARHXH010000018.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6689-9164Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP2R17_05330RefSeq proteinWP_098556297.1
Context group ID
GCF_029222485::NZ_JARHXH010000018.1::G00016Context members
P2R17_RS05310P2R17_RS05315
Partner locus tags
P2R17_RS05310P2R17_RS05315
Partner old locus tags
P2R17_05330P2R17_05335
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_098556297.1Primary protein accession used for annex mappings.
UniProt accessionA0A2B0XE79Primary UniProt accession resolved in the annex database.
UniProt IDA0A2B0XE79_BACANDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP2R17_RS05310Primary locus identifier stored in the genes table.
Old locus tagP2R17_05330Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARHXH010000018.1Sequence record reported by the local genomic context database.
Genomic interval6 689-8 521 nt1 833 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 689-9 164 ntGCF_029222485::NZ_JARHXH010000018.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029222485::NZ_JARHXH010000018.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARHXH010000018.1All displayed genes belong to this local TCS context.
Neighborhood span6 689-9 164 nt2 476 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 689 nt9 164 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P2R17_RS05310GCF_029222485#P2R17_RS05310
HKClassicCurrent focus
6 689-8 521 nt · Forward (+)
P2R17_RS05315GCF_029222485#P2R17_RS05315
RRNarL
8 523-9 164 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002566425#COJ30_RS17945Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1005326
Simplified PFAM architecture for HKOC_1005326
PFAM domain coverage: 157 / 610 aa (25.7%)
1 aa610 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[403-467] | HATPase_c[513-604]
- Domain count: 2
- Matched identifier: HKOC_1005326
- Positioned domains: HisKA_3 403-467 ; HATPase_c 513-604
Cluster members and taxonomy
Representative gene: GCF_002566425#COJ30_RS17945
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 031 022 · GCF_029222485
AssemblyASM2922248v1 · Contighaploid
Genome composition5 951 258 bp · 35,0% GCBacillus sp. Cr_R3
Signal transduction countsGenes 127 · HK 69 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key