1 HisKA_3#1
36-101 aa · 66 aa · 28.9% of protein
Raw token
HisKA_3:36:0.000000000000444:101:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PNW85_RS08110
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_028327205
ClassHKTypeClassicLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028327205#PNW85_RS08110Stable P2CS identifier used across views.
GenomeGCF_028327205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 228 aa (67.1%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
140-226 aa · 87 aa · 38.2% of protein
Raw token
HATPase_c:140:0.000000000261:226:101:109- Raw architecture: HisKA_3:36:0.000000000000444:101:68:68#HATPase_c:140:0.000000000261:226:101:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028327205::NZ_JAQMLA010000018.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span43279-44590Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPNW85_08100RefSeq proteinWP_081741086.1
Context group ID
GCF_028327205::NZ_JAQMLA010000018.1::G00018Context members
PNW85_RS08110PNW85_RS08115
Partner locus tags
PNW85_RS08110PNW85_RS08115
Partner old locus tags
PNW85_08100PNW85_08105
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_081741086.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW6DHR3Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW6DHR3_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPNW85_RS08110Primary locus identifier stored in the genes table.
Old locus tagPNW85_08100Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQMLA010000018.1Sequence record reported by the local genomic context database.
Genomic interval43 279-43 965 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span43 279-44 590 ntGCF_028327205::NZ_JAQMLA010000018.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028327205::NZ_JAQMLA010000018.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQMLA010000018.1All displayed genes belong to this local TCS context.
Neighborhood span43 279-44 590 nt1 312 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
43 279 nt44 590 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PNW85_RS08110GCF_028327205#PNW85_RS08110
HKClassicCurrent focus
43 279-43 965 nt · Forward (+)
PNW85_RS08115GCF_028327205#PNW85_RS08115
RRNarL
43 970-44 590 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042847265#ACGG94_RS13975Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2889584
Simplified PFAM architecture for HKOC_2889584
PFAM domain coverage: 65 / 298 aa (21.8%)
1 aa298 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[106-170]
- Domain count: 1
- Matched identifier: HKOC_2889584
- Positioned domains: HisKA_3 106-170
Cluster members and taxonomy
Representative gene: GCF_042847265#ACGG94_RS13975
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_028327205
AssemblyASM2832720v1 · Scaffoldhaploid
Genome composition4 221 822 bp · 42,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 101 · HK 45 · RR 52CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key