1 HisKA#1
133-197 aa · 65 aa · 18.3% of protein
Raw token
HisKA:133:0.0000000000074:197:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PNW85_RS01280
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_028327205
ClassHKTypeClassicLength356 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028327205#PNW85_RS01280Stable P2CS identifier used across views.
GenomeGCF_028327205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length356 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 356 aa (49.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa356 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
241-350 aa · 110 aa · 30.9% of protein
Raw token
HATPase_c:241:1.9e-25:350:111:109- Raw architecture: HisKA:133:0.0000000000074:197:65:64#HATPase_c:241:1.9e-25:350:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028327205::NZ_JAQMLA010000002.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span90172-91948Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPNW85_01280RefSeq proteinWP_022037555.1
Context group ID
GCF_028327205::NZ_JAQMLA010000002.1::G00028Context members
PNW85_RS01280PNW85_RS01285
Partner locus tags
PNW85_RS01280PNW85_RS01285
Partner old locus tags
PNW85_01280PNW85_01285
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022037555.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ1GDQ7Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ1GDQ7_MEDGNDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPNW85_RS01280Primary locus identifier stored in the genes table.
Old locus tagPNW85_01280Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQMLA010000002.1Sequence record reported by the local genomic context database.
Genomic interval90 172-91 242 nt1 071 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span90 172-91 948 ntGCF_028327205::NZ_JAQMLA010000002.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028327205::NZ_JAQMLA010000002.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQMLA010000002.1All displayed genes belong to this local TCS context.
Neighborhood span90 172-91 948 nt1 777 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
90 172 nt91 948 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PNW85_RS01280GCF_028327205#PNW85_RS01280
HKClassicCurrent focus
90 172-91 242 nt · Forward (+)
PNW85_RS01285GCF_028327205#PNW85_RS01285
RROmpR
91 235-91 948 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865325#CDL26_RS09885Use this link to inspect the representative gene detail.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2771243
Simplified PFAM architecture for HKOC_2771243
PFAM domain coverage: 281 / 356 aa (78.9%)
1 aa356 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[10-117] | HisKA[132-196] | HATPase_c[242-349]
- Domain count: 3
- Matched identifier: HKOC_2771243
- Positioned domains: DUF4118 10-117 ; HisKA 132-196 ; HATPase_c 242-349
Cluster members and taxonomy
Representative gene: GCF_002865325#CDL26_RS09885
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_028327205
AssemblyASM2832720v1 · Scaffoldhaploid
Genome composition4 221 822 bp · 42,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 101 · HK 45 · RR 52CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key