1 Response_reg#1
4-112 aa · 109 aa · 49.8% of protein
Raw token
Response_reg:4:8.97e-33:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PNW85_RS07590
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_028327205
ClassRRTypeOmpRLength219 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028327205#PNW85_RS07590Stable P2CS identifier used across views.
GenomeGCF_028327205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 219 aa (83.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-218 aa · 74 aa · 33.8% of protein
Raw token
Trans_reg_C:145:4.05e-23:218:76:77- Raw architecture: Response_reg:4:8.97e-33:112:111:111#Trans_reg_C:145:4.05e-23:218:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028327205::NZ_JAQMLA010000016.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span58019-60039Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPNW85_07580RefSeq proteinWP_023923889.1
Context group ID
GCF_028327205::NZ_JAQMLA010000016.1::G00016Context members
PNW85_RS07585PNW85_RS07590
Partner locus tags
PNW85_RS07585PNW85_RS07590
Partner old locus tags
PNW85_07575PNW85_07580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_023923889.1Primary protein accession used for annex mappings.
UniProt accessionA0A829NU44Primary UniProt accession resolved in the annex database.
UniProt IDA0A829NU44_MEDG5Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPNW85_RS07590Primary locus identifier stored in the genes table.
Old locus tagPNW85_07580Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQMLA010000016.1Sequence record reported by the local genomic context database.
Genomic interval59 380-60 039 nt660 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span58 019-60 039 ntGCF_028327205::NZ_JAQMLA010000016.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028327205::NZ_JAQMLA010000016.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQMLA010000016.1All displayed genes belong to this local TCS context.
Neighborhood span58 019-60 039 nt2 021 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
58 019 nt60 039 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PNW85_RS07585GCF_028327205#PNW85_RS07585
HKClassic
58 019-59 389 nt · Reverse (-)
PNW85_RS07590GCF_028327205#PNW85_RS07590
RROmpRCurrent focus
59 380-60 039 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000507805#HMPREF1201_RS05830Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1769593
Simplified PFAM architecture for RROC_1769593
PFAM domain coverage: 181 / 219 aa (82.6%)
1 aa219 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-111] | Trans_reg_C[145-217]
- Domain count: 2
- Matched identifier: RROC_1769593
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; Trans_reg_C 145-217 ; Trans_reg_C 145-217
Cluster members and taxonomy
Representative gene: GCF_000507805#HMPREF1201_RS05830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_028327205
AssemblyASM2832720v1 · Scaffoldhaploid
Genome composition4 221 822 bp · 42,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 101 · HK 45 · RR 52CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key