1 HAMP#1
150-221 aa · 72 aa · 15.8% of protein
Raw token
HAMP:150:0.00000245:221:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PNW85_RS07585
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_028327205
ClassHKTypeClassicLength456 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028327205#PNW85_RS07585Stable P2CS identifier used across views.
GenomeGCF_028327205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length456 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 456 aa (53.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa456 aa
Domain-by-domain annotation3 items
2 HisKA#2
232-293 aa · 62 aa · 13.6% of protein
Raw token
HisKA:232:0.000000263:293:62:643 HATPase_c#3
343-450 aa · 108 aa · 23.7% of protein
Raw token
HATPase_c:343:6.04e-17:450:108:109- Raw architecture: HAMP:150:0.00000245:221:72:69#HisKA:232:0.000000263:293:62:64#HATPase_c:343:6.04e-17:450:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028327205::NZ_JAQMLA010000016.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span58019-60039Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPNW85_07575RefSeq proteinWP_118444398.1
Context group ID
GCF_028327205::NZ_JAQMLA010000016.1::G00016Context members
PNW85_RS07585PNW85_RS07590
Partner locus tags
PNW85_RS07585PNW85_RS07590
Partner old locus tags
PNW85_07575PNW85_07580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118444398.1Primary protein accession used for annex mappings.
UniProt accessionA0A415SB33Primary UniProt accession resolved in the annex database.
UniProt IDA0A415SB33_MEDGNDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPNW85_RS07585Primary locus identifier stored in the genes table.
Old locus tagPNW85_07575Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQMLA010000016.1Sequence record reported by the local genomic context database.
Genomic interval58 019-59 389 nt1 371 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span58 019-60 039 ntGCF_028327205::NZ_JAQMLA010000016.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028327205::NZ_JAQMLA010000016.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQMLA010000016.1All displayed genes belong to this local TCS context.
Neighborhood span58 019-60 039 nt2 021 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
58 019 nt60 039 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PNW85_RS07585GCF_028327205#PNW85_RS07585
HKClassicCurrent focus
58 019-59 389 nt · Reverse (-)
PNW85_RS07590GCF_028327205#PNW85_RS07590
RROmpR
59 380-60 039 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003475365#DWZ50_RS06240Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1890700
Simplified PFAM architecture for HKOC_1890700
PFAM domain coverage: 158 / 456 aa (34.6%)
1 aa456 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[233-282] | HATPase_c[344-451]
- Domain count: 2
- Matched identifier: HKOC_1890700
- Positioned domains: HisKA 233-282 ; HATPase_c 344-451
Cluster members and taxonomy
Representative gene: GCF_003475365#DWZ50_RS06240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_028327205
AssemblyASM2832720v1 · Scaffoldhaploid
Genome composition4 221 822 bp · 42,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 101 · HK 45 · RR 52CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key