1 Response_reg#1
35-127 aa · 93 aa · 37.8% of protein
Raw token
Response_reg:35:0.000000000000713:127:95:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PNW85_RS07115
Response regulator LytTR family
Mediterraneibacter gnavus · GCF_028327205
ClassRRTypeLytTRLength246 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028327205#PNW85_RS07115Stable P2CS identifier used across views.
GenomeGCF_028327205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length246 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 246 aa (73.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa246 aa
Domain-by-domain annotation2 items
2 LytTR#2
150-236 aa · 87 aa · 35.4% of protein
Raw token
LytTR:150:0.000000000000828:236:92:98- Raw architecture: Response_reg:35:0.000000000000713:127:95:111#LytTR:150:0.000000000000828:236:92:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028327205::NZ_JAQMLA010000015.1::G00014
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span40367-41107Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPNW85_07105RefSeq proteinWP_272107805.1
Context group ID
GCF_028327205::NZ_JAQMLA010000015.1::G00014Context members
PNW85_RS07115
Partner locus tags
PNW85_RS07115
Partner old locus tags
PNW85_07105
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_272107805.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW6DIH1Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW6DIH1_MEDGNDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPNW85_RS07115Primary locus identifier stored in the genes table.
Old locus tagPNW85_07105Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQMLA010000015.1Sequence record reported by the local genomic context database.
Genomic interval40 367-41 107 nt741 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span40 367-41 107 ntGCF_028327205::NZ_JAQMLA010000015.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028327205::NZ_JAQMLA010000015.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQMLA010000015.1All displayed genes belong to this local TCS context.
Neighborhood span40 367-41 107 nt741 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
40 367 nt41 107 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PNW85_RS07115GCF_028327205#PNW85_RS07115
RRLytTRCurrent focus
40 367-41 107 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028327205#PNW85_RS07115The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0780978
Simplified PFAM architecture for RROC_0780978
PFAM domain coverage: 179 / 246 aa (72.8%)
1 aa246 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[35-126] | LytTR[150-236]
- Domain count: 2
- Matched identifier: RROC_0780978
- Positioned domains: Response_reg 35-126 ; LytTR 150-236
Cluster members and taxonomy
Representative gene: GCF_028327205#PNW85_RS07115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_028327205
AssemblyASM2832720v1 · Scaffoldhaploid
Genome composition4 221 822 bp · 42,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 101 · HK 45 · RR 52CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key