1 Response_reg#1
4-111 aa · 108 aa · 48.4% of protein
Raw token
Response_reg:4:6.72e-32:111:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PNW85_RS04395
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_028327205
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028327205#PNW85_RS04395Stable P2CS identifier used across views.
GenomeGCF_028327205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 223 aa (77.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-219 aa · 65 aa · 29.1% of protein
Raw token
Trans_reg_C:155:0.0000000000000447:219:66:77- Raw architecture: Response_reg:4:6.72e-32:111:109:111#Trans_reg_C:155:0.0000000000000447:219:66:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028327205::NZ_JAQMLA010000008.1::G00054
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span76506-77177Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPNW85_04395RefSeq proteinWP_118444996.1
Context group ID
GCF_028327205::NZ_JAQMLA010000008.1::G00054Context members
PNW85_RS04395
Partner locus tags
PNW85_RS04395
Partner old locus tags
PNW85_04395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118444996.1Primary protein accession used for annex mappings.
UniProt accessionA0A415S764Primary UniProt accession resolved in the annex database.
UniProt IDA0A415S764_MEDGNDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPNW85_RS04395Primary locus identifier stored in the genes table.
Old locus tagPNW85_04395Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQMLA010000008.1Sequence record reported by the local genomic context database.
Genomic interval76 506-77 177 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span76 506-77 177 ntGCF_028327205::NZ_JAQMLA010000008.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028327205::NZ_JAQMLA010000008.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQMLA010000008.1All displayed genes belong to this local TCS context.
Neighborhood span76 506-77 177 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
76 506 nt77 177 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PNW85_RS04395GCF_028327205#PNW85_RS04395
RROmpRCurrent focus
76 506-77 177 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003475365#DWZ50_RS13670Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1600284
Simplified PFAM architecture for RROC_1600284
PFAM domain coverage: 179 / 223 aa (80.3%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-111] | Trans_reg_C[148-218]
- Domain count: 2
- Matched identifier: RROC_1600284
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; Trans_reg_C 148-218 ; Trans_reg_C 148-218
Cluster members and taxonomy
Representative gene: GCF_003475365#DWZ50_RS13670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_028327205
AssemblyASM2832720v1 · Scaffoldhaploid
Genome composition4 221 822 bp · 42,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 101 · HK 45 · RR 52CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key