1 HAMP#1
179-244 aa · 66 aa · 13.3% of protein
Raw token
HAMP:179:0.00000000273:244:66:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMW03_RS14060
Histidine kinase, Classic
Clostridium paraputrificum · GCF_028210435
ClassHKTypeClassicLength498 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028210435#PMW03_RS14060Stable P2CS identifier used across views.
GenomeGCF_028210435Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length498 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 498 aa (49.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa498 aa
Domain-by-domain annotation3 items
2 HisKA#2
271-337 aa · 67 aa · 13.5% of protein
Raw token
HisKA:271:0.00000000000000353:337:67:643 HATPase_c#3
383-494 aa · 112 aa · 22.5% of protein
Raw token
HATPase_c:383:3.35e-20:494:113:109- Raw architecture: HAMP:179:0.00000000273:244:66:69#HisKA:271:0.00000000000000353:337:67:64#HATPase_c:383:3.35e-20:494:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028210435::NZ_JAQLCS010000195.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3723-5890Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMW03_14115RefSeq proteinWP_027097935.1
Context group ID
GCF_028210435::NZ_JAQLCS010000195.1::G00013Context members
PMW03_RS14060PMW03_RS14065
Partner locus tags
PMW03_RS14060PMW03_RS14065
Partner old locus tags
PMW03_14115PMW03_14120
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027097935.1Primary protein accession used for annex mappings.
UniProt accessionA0A1B8RM44Primary UniProt accession resolved in the annex database.
UniProt IDA0A1B8RM44_9CLOTDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMW03_RS14060Primary locus identifier stored in the genes table.
Old locus tagPMW03_14115Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLCS010000195.1Sequence record reported by the local genomic context database.
Genomic interval3 723-5 219 nt1 497 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 723-5 890 ntGCF_028210435::NZ_JAQLCS010000195.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028210435::NZ_JAQLCS010000195.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLCS010000195.1All displayed genes belong to this local TCS context.
Neighborhood span3 723-5 890 nt2 168 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 723 nt5 890 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PMW03_RS14060GCF_028210435#PMW03_RS14060
HKClassicCurrent focus
3 723-5 219 nt · Reverse (-)
PMW03_RS14065GCF_028210435#PMW03_RS14065
RROmpR
5 219-5 890 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS0107025Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1487275
Simplified PFAM architecture for HKOC_1487275
PFAM domain coverage: 175 / 498 aa (35.1%)
1 aa498 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[271-337] | HATPase_c[384-491]
- Domain count: 2
- Matched identifier: HKOC_1487275
- Positioned domains: HisKA 271-337 ; HATPase_c 384-491
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS0107025
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_028210435
AssemblyASM2821043v1 · Scaffoldhaploid
Genome composition3 540 313 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 73 · HK 38 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key