1 HisKA#1
154-220 aa · 67 aa · 16.3% of protein
Raw token
HisKA:154:0.000000000000107:220:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMW03_RS13440
Histidine kinase, Classic
Clostridium paraputrificum · GCF_028210435
ClassHKTypeClassicLength412 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028210435#PMW03_RS13440Stable P2CS identifier used across views.
GenomeGCF_028210435Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length412 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 412 aa (43.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa412 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
268-381 aa · 114 aa · 27.7% of protein
Raw token
HATPase_c:268:2.21e-26:381:114:109- Raw architecture: HisKA:154:0.000000000000107:220:67:64#HATPase_c:268:2.21e-26:381:114:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028210435::NZ_JAQLCS010000175.1::G00009
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span5578-6817Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMW03_13490RefSeq proteinWP_271842227.1
Context group ID
GCF_028210435::NZ_JAQLCS010000175.1::G00009Context members
PMW03_RS13440
Partner locus tags
PMW03_RS13440
Partner old locus tags
PMW03_13490
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_271842227.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMW03_RS13440Primary locus identifier stored in the genes table.
Old locus tagPMW03_13490Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLCS010000175.1Sequence record reported by the local genomic context database.
Genomic interval5 578-6 817 nt1 240 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 578-6 817 ntGCF_028210435::NZ_JAQLCS010000175.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028210435::NZ_JAQLCS010000175.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLCS010000175.1All displayed genes belong to this local TCS context.
Neighborhood span5 578-6 817 nt1 240 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 578 nt6 817 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PMW03_RS13440GCF_028210435#PMW03_RS13440
HKClassicCurrent focus
5 578-6 817 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028210435#PMW03_RS13440The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2340455
Simplified PFAM architecture for HKOC_2340455
PFAM domain coverage: 179 / 412 aa (43.4%)
1 aa412 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[154-219] | HATPase_c[268-380]
- Domain count: 2
- Matched identifier: HKOC_2340455
- Positioned domains: HisKA 154-219 ; HATPase_c 268-380
Cluster members and taxonomy
Representative gene: GCF_028210435#PMW03_RS13440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_028210435
AssemblyASM2821043v1 · Scaffoldhaploid
Genome composition3 540 313 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 73 · HK 38 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key