1 HisKA#1
836-900 aa · 65 aa · 6.1% of protein
Raw token
HisKA:836:0.0000000000000222:900:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMW03_RS09620
Histidine kinase, Classic
Clostridium paraputrificum · GCF_028210435
ClassHKTypeClassicLength1059 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028210435#PMW03_RS09620Stable P2CS identifier used across views.
GenomeGCF_028210435Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length1059 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 1059 aa (16.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1059 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
947-1058 aa · 112 aa · 10.6% of protein
Raw token
HATPase_c:947:4.06e-31:1058:112:109- Raw architecture: HisKA:836:0.0000000000000222:900:65:64#HATPase_c:947:4.06e-31:1058:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028210435::NZ_JAQLCS010000093.1::G00049
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-3180Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMW03_09660RefSeq proteinWP_271842181.1
Context group ID
GCF_028210435::NZ_JAQLCS010000093.1::G00049Context members
PMW03_RS09620
Partner locus tags
PMW03_RS09620
Partner old locus tags
PMW03_09660
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_271842181.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMW03_RS09620Primary locus identifier stored in the genes table.
Old locus tagPMW03_09660Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLCS010000093.1Sequence record reported by the local genomic context database.
Genomic interval1-3 180 nt3 180 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-3 180 ntGCF_028210435::NZ_JAQLCS010000093.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028210435::NZ_JAQLCS010000093.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLCS010000093.1All displayed genes belong to this local TCS context.
Neighborhood span1-3 180 nt3 180 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt3 180 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PMW03_RS09620GCF_028210435#PMW03_RS09620
HKClassicCurrent focus
1-3 180 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015551185#I2B67_RS09055Use this link to inspect the representative gene detail.
PFAM architectureReg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c11 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0247888
Simplified PFAM architecture for HKOC_0247888
PFAM domain coverage: 420 / 1068 aa (39.3%)
1 aa1068 aa
Reg_propReg_propReg_propReg_propReg_propReg_propReg_propReg_propY_Y_YHisKAHATPase_c
- Simplified architecture: Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c
- Raw architecture: Reg_prop[42-65] | Reg_prop[87-110] | Reg_prop[178-199] | Reg_prop[271-293] | Reg_prop[366-387] | Reg_prop[453-476] | Reg_prop[505-521] | Reg_prop[548-569] | Y_Y_Y[713-776] | HisKA[843-909] | HATPase_c[956-1066]
- Domain count: 11
- Matched identifier: HKOC_0247888
- Positioned domains: Reg_prop 42-65 ; Reg_prop 87-110 ; Reg_prop 178-199 ; Reg_prop 271-293 ; Reg_prop 366-387 ; Reg_prop 453-476 ; Reg_prop 505-521 ; Reg_prop 548-569 ; Y_Y_Y 713-776 ; HisKA 843-909 ; HATPase_c 956-1066
Cluster members and taxonomy
Representative gene: GCF_015551185#I2B67_RS09055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_028210435
AssemblyASM2821043v1 · Scaffoldhaploid
Genome composition3 540 313 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 73 · HK 38 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key