1 HisKA#1
194-260 aa · 67 aa · 16.2% of protein
Raw token
HisKA:194:0.0000000000128:260:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMW03_RS04115
Histidine kinase, Classic
Clostridium paraputrificum · GCF_028210435
ClassHKTypeClassicLength414 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028210435#PMW03_RS04115Stable P2CS identifier used across views.
GenomeGCF_028210435Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length414 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 414 aa (41.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa414 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
306-411 aa · 106 aa · 25.6% of protein
Raw token
HATPase_c:306:9.89e-27:411:106:109- Raw architecture: HisKA:194:0.0000000000128:260:67:64#HATPase_c:306:9.89e-27:411:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028210435::NZ_JAQLCS010000023.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span20845-22775Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMW03_04135RefSeq proteinWP_027098737.1
Context group ID
GCF_028210435::NZ_JAQLCS010000023.1::G00020Context members
PMW03_RS04110PMW03_RS04115
Partner locus tags
PMW03_RS04110PMW03_RS04115
Partner old locus tags
PMW03_04130PMW03_04135
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027098737.1Primary protein accession used for annex mappings.
UniProt accessionA0A174U6T5Primary UniProt accession resolved in the annex database.
UniProt IDA0A174U6T5_9CLOTDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMW03_RS04115Primary locus identifier stored in the genes table.
Old locus tagPMW03_04135Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLCS010000023.1Sequence record reported by the local genomic context database.
Genomic interval21 531-22 775 nt1 245 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span20 845-22 775 ntGCF_028210435::NZ_JAQLCS010000023.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028210435::NZ_JAQLCS010000023.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLCS010000023.1All displayed genes belong to this local TCS context.
Neighborhood span20 845-22 775 nt1 931 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 845 nt22 775 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PMW03_RS04110GCF_028210435#PMW03_RS04110
RROmpR
20 845-21 531 nt · Forward (+)
PMW03_RS04115GCF_028210435#PMW03_RS04115
HKClassicCurrent focus
21 531-22 775 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424025#G594_RS0111595Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2319792
Simplified PFAM architecture for HKOC_2319792
PFAM domain coverage: 173 / 414 aa (41.8%)
1 aa414 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[194-260] | HATPase_c[306-411]
- Domain count: 2
- Matched identifier: HKOC_2319792
- Positioned domains: HisKA 194-260 ; HATPase_c 306-411
Cluster members and taxonomy
Representative gene: GCF_000424025#G594_RS0111595
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_028210435
AssemblyASM2821043v1 · Scaffoldhaploid
Genome composition3 540 313 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 73 · HK 38 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key