1 HAMP#1
170-238 aa · 69 aa · 14.9% of protein
Raw token
HAMP:170:0.000000000174:238:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMZ79_RS17150
Histidine kinase, Classic
Clostridium paraputrificum · GCF_028210315
ClassHKTypeClassicLength464 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028210315#PMZ79_RS17150Stable P2CS identifier used across views.
GenomeGCF_028210315Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length464 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 464 aa (52.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa464 aa
Domain-by-domain annotation3 items
2 HisKA#2
244-308 aa · 65 aa · 14.0% of protein
Raw token
HisKA:244:0.0000000000000123:308:65:643 HATPase_c#3
353-462 aa · 110 aa · 23.7% of protein
Raw token
HATPase_c:353:8.16e-29:462:110:109- Raw architecture: HAMP:170:0.000000000174:238:69:69#HisKA:244:0.0000000000000123:308:65:64#HATPase_c:353:8.16e-29:462:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028210315::NZ_JAQLHG010000028.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span14248-16294Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMZ79_17150RefSeq proteinWP_082419909.1
Context group ID
GCF_028210315::NZ_JAQLHG010000028.1::G00020Context members
PMZ79_RS17150PMZ79_RS17155
Partner locus tags
PMZ79_RS17150PMZ79_RS17155
Partner old locus tags
PMZ79_17150PMZ79_17155
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_082419909.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMZ79_RS17150Primary locus identifier stored in the genes table.
Old locus tagPMZ79_17150Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLHG010000028.1Sequence record reported by the local genomic context database.
Genomic interval14 248-15 642 nt1 395 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span14 248-16 294 ntGCF_028210315::NZ_JAQLHG010000028.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028210315::NZ_JAQLHG010000028.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLHG010000028.1All displayed genes belong to this local TCS context.
Neighborhood span14 248-16 294 nt2 047 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 248 nt16 294 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PMZ79_RS17150GCF_028210315#PMZ79_RS17150
HKClassicCurrent focus
14 248-15 642 nt · Reverse (-)
PMZ79_RS17155GCF_028210315#PMZ79_RS17155
RROmpR
15 596-16 294 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028210315#PMZ79_RS17150The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1790500
Simplified PFAM architecture for HKOC_1790500
PFAM domain coverage: 175 / 464 aa (37.7%)
1 aa464 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[245-308] | HATPase_c[353-463]
- Domain count: 2
- Matched identifier: HKOC_1790500
- Positioned domains: HisKA 245-308 ; HATPase_c 353-463
Cluster members and taxonomy
Representative gene: GCF_028210315#PMZ79_RS17150
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_028210315
AssemblyASM2821031v1 · Scaffoldhaploid
Genome composition3 618 798 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key