1 HisKA#1
321-383 aa · 63 aa · 9.1% of protein
Raw token
HisKA:321:0.000000000000267:383:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMZ79_RS01155
Histidine kinase, Hybrid
Clostridium paraputrificum · GCF_028210315
ClassHKTypeHybridLength695 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_028210315#PMZ79_RS01155Stable P2CS identifier used across views.
GenomeGCF_028210315Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length695 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage299 / 695 aa (43.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa695 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
435-552 aa · 118 aa · 17.0% of protein
Raw token
HATPase_c:435:4.74e-27:552:118:1093 Response_reg#3
575-692 aa · 118 aa · 17.0% of protein
Raw token
Response_reg:575:4.05e-18:692:119:111- Raw architecture: HisKA:321:0.000000000000267:383:63:64#HATPase_c:435:4.74e-27:552:118:109#Response_reg:575:4.05e-18:692:119:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_028210315::NZ_JAQLHG010000001.1::G00016
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span232713-236981Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMZ79_01160RefSeq proteinWP_271815254.1
Context group ID
GCF_028210315::NZ_JAQLHG010000001.1::G00016Context members
PMZ79_RS01150PMZ79_RS01155PMZ79_RS01165
Partner locus tags
PMZ79_RS01150PMZ79_RS01155PMZ79_RS01165
Partner old locus tags
PMZ79_01155PMZ79_01160PMZ79_01170
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_271815254.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMZ79_RS01155Primary locus identifier stored in the genes table.
Old locus tagPMZ79_01160Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLHG010000001.1Sequence record reported by the local genomic context database.
Genomic interval233 728-235 815 nt2 088 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span232 713-236 981 ntGCF_028210315::NZ_JAQLHG010000001.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028210315::NZ_JAQLHG010000001.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLHG010000001.1All displayed genes belong to this local TCS context.
Neighborhood span232 713-236 981 nt4 269 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
232 713 nt236 981 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
PMZ79_RS01150GCF_028210315#PMZ79_RS01150
RRRpfG
232 713-233 744 nt · Forward (+)
PMZ79_RS01155GCF_028210315#PMZ79_RS01155
HKHybridCurrent focus
233 728-235 815 nt · Forward (+)
PMZ79_RS01165GCF_028210315#PMZ79_RS01165
RRunclassified
236 202-236 981 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028210315#PMZ79_RS01155The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0781407
Simplified PFAM architecture for HKOC_0781407
PFAM domain coverage: 297 / 695 aa (42.7%)
1 aa695 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[322-384] | HATPase_c[435-551] | Response_reg[575-691]
- Domain count: 3
- Matched identifier: HKOC_0781407
- Positioned domains: HisKA 322-384 ; HATPase_c 435-551 ; Response_reg 575-691
Cluster members and taxonomy
Representative gene: GCF_028210315#PMZ79_RS01155
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_028210315
AssemblyASM2821031v1 · Scaffoldhaploid
Genome composition3 618 798 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key