1 Response_reg#1
8-116 aa · 109 aa · 20.5% of protein
Raw token
Response_reg:8:5.63e-26:116:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QMG10_RS08115
Response regulator, unclassified
Coprococcus comes · GCF_027924745
ClassRRTypeunclassifiedLength532 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027924745#QMG10_RS08115Stable P2CS identifier used across views.
GenomeGCF_027924745Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length532 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage181 / 532 aa (34.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa532 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
438-477 aa · 40 aa · 7.5% of protein
Raw token
HTH_AraC:438:0.0000946:477:40:423 HTH_AraC#3
495-526 aa · 32 aa · 6.0% of protein
Raw token
HTH_AraC:495:0.000000911:526:32:42- Raw architecture: Response_reg:8:5.63e-26:116:109:111#HTH_AraC:438:0.0000946:477:40:42#HTH_AraC:495:0.000000911:526:32:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027924745::NZ_BSCI01000008.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span96303-99679Genomic interval covered by the local TCS group.
Identifiers
Old locus tagcomes_16160RefSeq proteinWP_055156077.1
Context group ID
GCF_027924745::NZ_BSCI01000008.1::G00017Context members
QMG10_RS08115QMG10_RS08120
Partner locus tags
QMG10_RS08115QMG10_RS08120
Partner old locus tags
comes_16160comes_16170
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055156077.1Primary protein accession used for annex mappings.
UniProt accessionA0A173S5C8Primary UniProt accession resolved in the annex database.
UniProt IDA0A173S5C8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQMG10_RS08115Primary locus identifier stored in the genes table.
Old locus tagcomes_16160Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BSCI01000008.1Sequence record reported by the local genomic context database.
Genomic interval96 303-97 901 nt1 599 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span96 303-99 679 ntGCF_027924745::NZ_BSCI01000008.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027924745::NZ_BSCI01000008.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BSCI01000008.1All displayed genes belong to this local TCS context.
Neighborhood span96 303-99 679 nt3 377 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
96 303 nt99 679 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QMG10_RS08115GCF_027924745#QMG10_RS08115
RRunclassifiedCurrent focus
96 303-97 901 nt · Forward (+)
QMG10_RS08120GCF_027924745#QMG10_RS08120
HKClassic
97 898-99 679 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404595#AQ998_RS06585Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0107988
Simplified PFAM architecture for RROC_0107988
PFAM domain coverage: 294 / 532 aa (55.3%)
1 aa532 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[7-118] | GGDEF_2[183-286] | HTH_18[451-528]
- Domain count: 3
- Matched identifier: RROC_0107988
- Positioned domains: Response_reg 7-118 ; Response_reg 7-118 ; GGDEF_2 183-286 ; GGDEF_2 183-286 ; HTH_18 451-528 ; HTH_18 451-528
Cluster members and taxonomy
Representative gene: GCF_001404595#AQ998_RS06585
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_027924745
AssemblyASM2792474v1 · Contighaploid
Genome composition3 216 899 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 71 · HK 35 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key