1 HisKA#1
197-260 aa · 64 aa · 15.2% of protein
Raw token
HisKA:197:0.0000000696:260:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QMG10_RS01225
Histidine kinase, Classic
Coprococcus comes · GCF_027924745
ClassHKTypeClassicLength421 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027924745#QMG10_RS01225Stable P2CS identifier used across views.
GenomeGCF_027924745Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length421 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 421 aa (41.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa421 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
309-418 aa · 110 aa · 26.1% of protein
Raw token
HATPase_c:309:3.49e-30:418:110:109- Raw architecture: HisKA:197:0.0000000696:260:64:64#HATPase_c:309:3.49e-30:418:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027924745::NZ_BSCI01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span255610-257540Genomic interval covered by the local TCS group.
Identifiers
Old locus tagcomes_02430RefSeq proteinWP_055247957.1
Context group ID
GCF_027924745::NZ_BSCI01000001.1::G00003Context members
QMG10_RS01225QMG10_RS01230
Partner locus tags
QMG10_RS01225QMG10_RS01230
Partner old locus tags
comes_02430comes_02440
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055247957.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQMG10_RS01225Primary locus identifier stored in the genes table.
Old locus tagcomes_02430Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BSCI01000001.1Sequence record reported by the local genomic context database.
Genomic interval255 610-256 875 nt1 266 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span255 610-257 540 ntGCF_027924745::NZ_BSCI01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027924745::NZ_BSCI01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BSCI01000001.1All displayed genes belong to this local TCS context.
Neighborhood span255 610-257 540 nt1 931 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
255 610 nt257 540 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QMG10_RS01225GCF_027924745#QMG10_RS01225
HKClassicCurrent focus
255 610-256 875 nt · Reverse (-)
QMG10_RS01230GCF_027924745#QMG10_RS01230
RROmpR
256 851-257 540 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404595#AQ998_RS07815Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2257437
Simplified PFAM architecture for HKOC_2257437
PFAM domain coverage: 175 / 421 aa (41.6%)
1 aa421 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[197-260] | HATPase_c[309-419]
- Domain count: 2
- Matched identifier: HKOC_2257437
- Positioned domains: HisKA 197-260 ; HATPase_c 309-419
Cluster members and taxonomy
Representative gene: GCF_001404595#AQ998_RS07815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_027924745
AssemblyASM2792474v1 · Contighaploid
Genome composition3 216 899 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 71 · HK 35 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key