1 Response_reg#1
3-112 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:3:3.61e-36:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG788_RS12900
Response regulator OmpR family
Coprococcus sp. LG100-32 · GCF_027695925
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027695925#PG788_RS12900Stable P2CS identifier used across views.
GenomeGCF_027695925Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 229 aa (81.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-226 aa · 76 aa · 33.2% of protein
Raw token
Trans_reg_C:151:1.65e-29:226:76:77- Raw architecture: Response_reg:3:3.61e-36:112:111:111#Trans_reg_C:151:1.65e-29:226:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027695925::NZ_JAQEUC010000022.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9499-11368Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027695925::NZ_JAQEUC010000022.1::G00014Context members
PG788_RS12900PG788_RS12905
Partner locus tags
PG788_RS12900PG788_RS12905
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_004614354.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG788_RS12900Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEUC010000022.1Sequence record reported by the local genomic context database.
Genomic interval9 499-10 188 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span9 499-11 368 ntGCF_027695925::NZ_JAQEUC010000022.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027695925::NZ_JAQEUC010000022.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEUC010000022.1All displayed genes belong to this local TCS context.
Neighborhood span9 499-11 368 nt1 870 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 499 nt11 368 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PG788_RS12900GCF_027695925#PG788_RS12900
RROmpRCurrent focus
9 499-10 188 nt · Forward (+)
PG788_RS12905GCF_027695925#PG788_RS12905
HKClassic
10 178-11 368 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027695925#PG788_RS12900The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1279487
Simplified PFAM architecture for RROC_1279487
PFAM domain coverage: 186 / 229 aa (81.2%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[151-226]
- Domain count: 2
- Matched identifier: RROC_1279487
- Positioned domains: Response_reg 3-112 ; Trans_reg_C 151-226
Cluster members and taxonomy
Representative gene: GCF_027695925#PG788_RS12900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 997 994 · GCF_027695925
AssemblyASM2769592v1 · Scaffoldhaploid
Genome composition3 193 648 bp · 40,0% GCCoprococcus sp. LG100-32
Signal transduction countsGenes 60 · HK 29 · RR 31CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key