1 HAMP#1
183-252 aa · 70 aa · 14.1% of protein
Raw token
HAMP:183:0.0000000000000287:252:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG788_RS06910
Histidine kinase, Classic
Coprococcus sp. LG100-32 · GCF_027695925
ClassHKTypeClassicLength496 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027695925#PG788_RS06910Stable P2CS identifier used across views.
GenomeGCF_027695925Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length496 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 496 aa (50.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa496 aa
Domain-by-domain annotation3 items
2 HisKA#2
266-330 aa · 65 aa · 13.1% of protein
Raw token
HisKA:266:7.81e-16:330:65:643 HATPase_c#3
377-490 aa · 114 aa · 23.0% of protein
Raw token
HATPase_c:377:2.17e-30:490:114:109- Raw architecture: HAMP:183:0.0000000000000287:252:70:69#HisKA:266:7.81e-16:330:65:64#HATPase_c:377:2.17e-30:490:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027695925::NZ_JAQEUC010000007.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span111218-113390Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027695925::NZ_JAQEUC010000007.1::G00031Context members
PG788_RS06910PG788_RS06915
Partner locus tags
PG788_RS06910PG788_RS06915
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022250737.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG788_RS06910Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQEUC010000007.1Sequence record reported by the local genomic context database.
Genomic interval111 218-112 708 nt1 491 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span111 218-113 390 ntGCF_027695925::NZ_JAQEUC010000007.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027695925::NZ_JAQEUC010000007.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQEUC010000007.1All displayed genes belong to this local TCS context.
Neighborhood span111 218-113 390 nt2 173 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
111 218 nt113 390 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PG788_RS06910GCF_027695925#PG788_RS06910
HKClassicCurrent focus
111 218-112 708 nt · Forward (+)
PG788_RS06915GCF_027695925#PG788_RS06915
RROmpR
112 701-113 390 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027695925#PG788_RS06910The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1501789
Simplified PFAM architecture for HKOC_1501789
PFAM domain coverage: 229 / 496 aa (46.2%)
1 aa496 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[200-252] | HisKA[265-329] | HATPase_c[378-488]
- Domain count: 3
- Matched identifier: HKOC_1501789
- Positioned domains: HAMP 200-252 ; HisKA 265-329 ; HATPase_c 378-488
Cluster members and taxonomy
Representative gene: GCF_027695925#PG788_RS06910
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 997 994 · GCF_027695925
AssemblyASM2769592v1 · Scaffoldhaploid
Genome composition3 193 648 bp · 40,0% GCCoprococcus sp. LG100-32
Signal transduction countsGenes 60 · HK 29 · RR 31CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key