1 Response_reg#1
5-104 aa · 100 aa · 48.1% of protein
Raw token
Response_reg:5:6.15e-25:104:100:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG434_RS05325
Response regulator NarL family
Faecalimonas umbilicata · GCF_027691975
ClassRRTypeNarLLength208 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027691975#PG434_RS05325Stable P2CS identifier used across views.
GenomeGCF_027691975Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalimonas
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length208 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 208 aa (74.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa208 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
149-202 aa · 54 aa · 26.0% of protein
Raw token
HTH_LUXR:149:9.24e-20:202:54:58- Raw architecture: Response_reg:5:6.15e-25:104:100:111#HTH_LUXR:149:9.24e-20:202:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027691975::NZ_JAQFAJ010000004.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span93312-94666Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027691975::NZ_JAQFAJ010000004.1::G00018Context members
PG434_RS05325PG434_RS05330
Partner locus tags
PG434_RS05325PG434_RS05330
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117577194.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG434_RS05325Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQFAJ010000004.1Sequence record reported by the local genomic context database.
Genomic interval93 312-93 938 nt627 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span93 312-94 666 ntGCF_027691975::NZ_JAQFAJ010000004.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027691975::NZ_JAQFAJ010000004.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQFAJ010000004.1All displayed genes belong to this local TCS context.
Neighborhood span93 312-94 666 nt1 355 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
93 312 nt94 666 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PG434_RS05325GCF_027691975#PG434_RS05325
RRNarLCurrent focus
93 312-93 938 nt · Reverse (-)
PG434_RS05330GCF_027691975#PG434_RS05330
HKClassic
93 935-94 666 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027691975#PG434_RS05325The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2065507
Simplified PFAM architecture for RROC_2065507
PFAM domain coverage: 156 / 208 aa (75.0%)
1 aa208 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[5-105] | GerE[148-202]
- Domain count: 2
- Matched identifier: RROC_2065507
- Positioned domains: Response_reg 5-105 ; GerE 148-202
Cluster members and taxonomy
Representative gene: GCF_027691975#PG434_RS05325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 855 · GCF_027691975
AssemblyASM2769197v1 · Scaffoldhaploid
Genome composition2 948 785 bp · 41,5% GCFaecalimonas umbilicata
Signal transduction countsGenes 78 · HK 40 · RR 38CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalimonas
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalimonas
Related genes
Preview from the same derived genome key