1 Response_reg#1
4-117 aa · 114 aa · 50.4% of protein
Raw token
Response_reg:4:9.48e-28:117:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PG434_RS01295
Response regulator OmpR family
Faecalimonas umbilicata · GCF_027691975
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027691975#PG434_RS01295Stable P2CS identifier used across views.
GenomeGCF_027691975Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalimonas
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 226 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-224 aa · 70 aa · 31.0% of protein
Raw token
Trans_reg_C:155:5.18e-22:224:72:77- Raw architecture: Response_reg:4:9.48e-28:117:115:111#Trans_reg_C:155:5.18e-22:224:72:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027691975::NZ_JAQFAJ010000001.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span288601-290201Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027691975::NZ_JAQFAJ010000001.1::G00006Context members
PG434_RS01295PG434_RS01300
Partner locus tags
PG434_RS01295PG434_RS01300
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016439188.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPG434_RS01295Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQFAJ010000001.1Sequence record reported by the local genomic context database.
Genomic interval288 601-289 281 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span288 601-290 201 ntGCF_027691975::NZ_JAQFAJ010000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027691975::NZ_JAQFAJ010000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQFAJ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span288 601-290 201 nt1 601 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
288 601 nt290 201 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PG434_RS01295GCF_027691975#PG434_RS01295
RROmpRCurrent focus
288 601-289 281 nt · Forward (+)
PG434_RS01300GCF_027691975#PG434_RS01300
HKClassic
289 278-290 201 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027691975#PG434_RS01295The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1439353
Simplified PFAM architecture for RROC_1439353
PFAM domain coverage: 185 / 226 aa (81.9%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-116] | Trans_reg_C[152-223]
- Domain count: 2
- Matched identifier: RROC_1439353
- Positioned domains: Response_reg 4-116 ; Trans_reg_C 152-223
Cluster members and taxonomy
Representative gene: GCF_027691975#PG434_RS01295
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 855 · GCF_027691975
AssemblyASM2769197v1 · Scaffoldhaploid
Genome composition2 948 785 bp · 41,5% GCFaecalimonas umbilicata
Signal transduction countsGenes 78 · HK 40 · RR 38CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalimonas
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalimonas
Related genes
Preview from the same derived genome key