1 HAMP#1
167-234 aa · 68 aa · 14.5% of protein
Raw token
HAMP:167:0.0000000000000671:234:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PGY38_RS01750
Histidine kinase, Classic
Coprococcus catus · GCF_027683965
ClassHKTypeClassicLength469 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027683965#PGY38_RS01750Stable P2CS identifier used across views.
GenomeGCF_027683965Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length469 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage236 / 469 aa (50.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa469 aa
Domain-by-domain annotation3 items
2 HisKA#2
245-305 aa · 61 aa · 13.0% of protein
Raw token
HisKA:245:0.0000000000285:305:61:643 HATPase_c#3
355-461 aa · 107 aa · 22.8% of protein
Raw token
HATPase_c:355:4.83e-26:461:107:109- Raw architecture: HAMP:167:0.0000000000000671:234:68:69#HisKA:245:0.0000000000285:305:61:64#HATPase_c:355:4.83e-26:461:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027683965::NZ_JAQCWV010000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span364815-366880Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027683965::NZ_JAQCWV010000001.1::G00005Context members
PGY38_RS01750PGY38_RS01755
Partner locus tags
PGY38_RS01750PGY38_RS01755
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_270514021.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPGY38_RS01750Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQCWV010000001.1Sequence record reported by the local genomic context database.
Genomic interval364 815-366 224 nt1 410 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span364 815-366 880 ntGCF_027683965::NZ_JAQCWV010000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027683965::NZ_JAQCWV010000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQCWV010000001.1All displayed genes belong to this local TCS context.
Neighborhood span364 815-366 880 nt2 066 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
364 815 nt366 880 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PGY38_RS01750GCF_027683965#PGY38_RS01750
HKClassicCurrent focus
364 815-366 224 nt · Reverse (-)
PGY38_RS01755GCF_027683965#PGY38_RS01755
RROmpR
366 221-366 880 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027683965#PGY38_RS01750The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1733090
Simplified PFAM architecture for HKOC_1733090
PFAM domain coverage: 217 / 469 aa (46.3%)
1 aa469 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[183-234] | HisKA[246-305] | HATPase_c[356-460]
- Domain count: 3
- Matched identifier: HKOC_1733090
- Positioned domains: HAMP 183-234 ; HisKA 246-305 ; HATPase_c 356-460
Cluster members and taxonomy
Representative gene: GCF_027683965#PGY38_RS01750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 116 085 · GCF_027683965
AssemblyASM2768396v1 · Scaffoldhaploid
Genome composition3 667 221 bp · 43,5% GCCoprococcus catus
Signal transduction countsGenes 86 · HK 41 · RR 43CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key