1 HAMP#1
93-162 aa · 70 aa · 17.3% of protein
Raw token
HAMP:93:0.000000000134:162:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PGY38_RS00290
Histidine kinase, Classic
Coprococcus catus · GCF_027683965
ClassHKTypeClassicLength405 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027683965#PGY38_RS00290Stable P2CS identifier used across views.
GenomeGCF_027683965Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length405 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 405 aa (60.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa405 aa
Domain-by-domain annotation3 items
2 HisKA#2
174-240 aa · 67 aa · 16.5% of protein
Raw token
HisKA:174:0.000000000000347:240:67:643 HATPase_c#3
286-394 aa · 109 aa · 26.9% of protein
Raw token
HATPase_c:286:2.19e-26:394:110:109- Raw architecture: HAMP:93:0.000000000134:162:70:69#HisKA:174:0.000000000000347:240:67:64#HATPase_c:286:2.19e-26:394:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027683965::NZ_JAQCWV010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span59826-61731Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027683965::NZ_JAQCWV010000001.1::G00002Context members
PGY38_RS00285PGY38_RS00290
Partner locus tags
PGY38_RS00285PGY38_RS00290
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_270513920.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPGY38_RS00290Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQCWV010000001.1Sequence record reported by the local genomic context database.
Genomic interval60 514-61 731 nt1 218 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span59 826-61 731 ntGCF_027683965::NZ_JAQCWV010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027683965::NZ_JAQCWV010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQCWV010000001.1All displayed genes belong to this local TCS context.
Neighborhood span59 826-61 731 nt1 906 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 826 nt61 731 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PGY38_RS00285GCF_027683965#PGY38_RS00285
RROmpR
59 826-60 524 nt · Forward (+)
PGY38_RS00290GCF_027683965#PGY38_RS00290
HKClassicCurrent focus
60 514-61 731 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027683965#PGY38_RS00290The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2401913
Simplified PFAM architecture for HKOC_2401913
PFAM domain coverage: 222 / 405 aa (54.8%)
1 aa405 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[115-161] | HisKA[174-239] | HATPase_c[287-395]
- Domain count: 3
- Matched identifier: HKOC_2401913
- Positioned domains: HAMP 115-161 ; HisKA 174-239 ; HATPase_c 287-395
Cluster members and taxonomy
Representative gene: GCF_027683965#PGY38_RS00290
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 116 085 · GCF_027683965
AssemblyASM2768396v1 · Scaffoldhaploid
Genome composition3 667 221 bp · 43,5% GCCoprococcus catus
Signal transduction countsGenes 86 · HK 41 · RR 43CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key