1 HisKA#1
228-294 aa · 67 aa · 14.8% of protein
Raw token
HisKA:228:0.000000000262:294:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PGR17_RS10580
Histidine kinase, Classic
Faecalimonas umbilicata · GCF_027664575
ClassHKTypeClassicLength454 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_027664575#PGR17_RS10580Stable P2CS identifier used across views.
GenomeGCF_027664575Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalimonas
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length454 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 454 aa (38.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa454 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
343-451 aa · 109 aa · 24.0% of protein
Raw token
HATPase_c:343:8.48e-19:451:109:109- Raw architecture: HisKA:228:0.000000000262:294:67:64#HATPase_c:343:8.48e-19:451:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_027664575::NZ_JAQDFQ010000010.1::G00012
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span102561-103925Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027664575::NZ_JAQDFQ010000010.1::G00012Context members
PGR17_RS10580
Partner locus tags
PGR17_RS10580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_119988612.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPGR17_RS10580Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQDFQ010000010.1Sequence record reported by the local genomic context database.
Genomic interval102 561-103 925 nt1 365 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span102 561-103 925 ntGCF_027664575::NZ_JAQDFQ010000010.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027664575::NZ_JAQDFQ010000010.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQDFQ010000010.1All displayed genes belong to this local TCS context.
Neighborhood span102 561-103 925 nt1 365 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
102 561 nt103 925 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PGR17_RS10580GCF_027664575#PGR17_RS10580
HKClassicCurrent focus
102 561-103 925 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027664575#PGR17_RS10580The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1919661
Simplified PFAM architecture for HKOC_1919661
PFAM domain coverage: 174 / 454 aa (38.3%)
1 aa454 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[229-293] | HATPase_c[343-451]
- Domain count: 2
- Matched identifier: HKOC_1919661
- Positioned domains: HisKA 229-293 ; HATPase_c 343-451
Cluster members and taxonomy
Representative gene: GCF_027664575#PGR17_RS10580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 855 · GCF_027664575
AssemblyASM2766457v1 · Scaffoldhaploid
Genome composition2 993 051 bp · 41,5% GCFaecalimonas umbilicata
Signal transduction countsGenes 84 · HK 42 · RR 42CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalimonas
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalimonas
Related genes
Preview from the same derived genome key