1 HisKA#1
52-116 aa · 65 aa · 24.2% of protein
Raw token
HisKA:52:0.000000746:116:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PGR17_RS01595
Histidine kinase, Classic
Faecalimonas umbilicata · GCF_027664575
ClassHKTypeClassicLength269 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027664575#PGR17_RS01595Stable P2CS identifier used across views.
GenomeGCF_027664575Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalimonas
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length269 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 269 aa (61.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa269 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
168-268 aa · 101 aa · 37.5% of protein
Raw token
HATPase_c:168:1.72e-20:268:104:109- Raw architecture: HisKA:52:0.000000746:116:65:64#HATPase_c:168:1.72e-20:268:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027664575::NZ_JAQDFQ010000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span321340-323118Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027664575::NZ_JAQDFQ010000001.1::G00003Context members
PGR17_RS01585PGR17_RS01595
Partner locus tags
PGR17_RS01585PGR17_RS01595
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_270196068.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPGR17_RS01595Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQDFQ010000001.1Sequence record reported by the local genomic context database.
Genomic interval322 309-323 118 nt810 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span321 340-323 118 ntGCF_027664575::NZ_JAQDFQ010000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027664575::NZ_JAQDFQ010000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQDFQ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span321 340-323 118 nt1 779 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
321 340 nt323 118 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PGR17_RS01585GCF_027664575#PGR17_RS01585
RROmpR
321 340-322 005 nt · Forward (+)
PGR17_RS01595GCF_027664575#PGR17_RS01595
HKClassicCurrent focus
322 309-323 118 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027664585#PGR50_RS14270Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2884367
Simplified PFAM architecture for HKOC_2884367
PFAM domain coverage: 217 / 303 aa (71.6%)
1 aa303 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[17-66] | HisKA[87-150] | HATPase_c[200-302]
- Domain count: 3
- Matched identifier: HKOC_2884367
- Positioned domains: HAMP 17-66 ; HisKA 87-150 ; HATPase_c 200-302
Cluster members and taxonomy
Representative gene: GCF_027664585#PGR50_RS14270
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 855 · GCF_027664575
AssemblyASM2766457v1 · Scaffoldhaploid
Genome composition2 993 051 bp · 41,5% GCFaecalimonas umbilicata
Signal transduction countsGenes 84 · HK 42 · RR 42CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalimonas
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalimonas
Related genes
Preview from the same derived genome key