1 sCache_like#1
68-131 aa · 64 aa · 14.2% of protein
Raw token
sCache_like:68:0.000000186:131:64:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PGR17_RS08325
Histidine kinase, Classic
Faecalimonas umbilicata · GCF_027664575
ClassHKTypeClassicLength450 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_027664575#PGR17_RS08325Stable P2CS identifier used across views.
GenomeGCF_027664575Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalimonas
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length450 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 450 aa (53.1%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa450 aa
Domain-by-domain annotation3 items
2 HisKA#2
218-283 aa · 66 aa · 14.7% of protein
Raw token
HisKA:218:1.55e-16:283:66:643 HATPase_c#3
328-436 aa · 109 aa · 24.2% of protein
Raw token
HATPase_c:328:1.37e-24:436:109:109- Raw architecture: sCache_like:68:0.000000186:131:64:114#HisKA:218:1.55e-16:283:66:64#HATPase_c:328:1.37e-24:436:109:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_027664575::NZ_JAQDFQ010000007.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span82181-84203Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_027664575::NZ_JAQDFQ010000007.1::G00038Context members
PGR17_RS08320PGR17_RS08325
Partner locus tags
PGR17_RS08320PGR17_RS08325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016438323.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPGR17_RS08325Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAQDFQ010000007.1Sequence record reported by the local genomic context database.
Genomic interval82 851-84 203 nt1 353 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span82 181-84 203 ntGCF_027664575::NZ_JAQDFQ010000007.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_027664575::NZ_JAQDFQ010000007.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQDFQ010000007.1All displayed genes belong to this local TCS context.
Neighborhood span82 181-84 203 nt2 023 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
82 181 nt84 203 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PGR17_RS08320GCF_027664575#PGR17_RS08320
RROmpR
82 181-82 861 nt · Forward (+)
PGR17_RS08325GCF_027664575#PGR17_RS08325
HKClassicCurrent focus
82 851-84 203 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027664575#PGR17_RS08325The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1968567
Simplified PFAM architecture for HKOC_1968567
PFAM domain coverage: 171 / 450 aa (38.0%)
1 aa450 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[218-283] | HATPase_c[331-435]
- Domain count: 2
- Matched identifier: HKOC_1968567
- Positioned domains: HisKA 218-283 ; HATPase_c 331-435
Cluster members and taxonomy
Representative gene: GCF_027664575#PGR17_RS08325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 912 855 · GCF_027664575
AssemblyASM2766457v1 · Scaffoldhaploid
Genome composition2 993 051 bp · 41,5% GCFaecalimonas umbilicata
Signal transduction countsGenes 84 · HK 42 · RR 42CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalimonas
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalimonas
Related genes
Preview from the same derived genome key