1 Response_reg#1
12-116 aa · 105 aa · 20.3% of protein
Raw token
Response_reg:12:5.98e-31:116:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QVE66_RS08615
Response regulator, unclassified
Blautia sp. · GCF_026169175
ClassRRTypeunclassifiedLength516 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_026169175#QVE66_RS08615Stable P2CS identifier used across views.
GenomeGCF_026169175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length516 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage177 / 516 aa (34.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa516 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
415-454 aa · 40 aa · 7.8% of protein
Raw token
HTH_AraC:415:0.000000428:454:40:423 HTH_AraC#3
468-499 aa · 32 aa · 6.2% of protein
Raw token
HTH_AraC:468:0.000000351:499:32:42- Raw architecture: Response_reg:12:5.98e-31:116:105:111#HTH_AraC:415:0.000000428:454:40:42#HTH_AraC:468:0.000000351:499:32:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_026169175::NZ_JAPFDU010000060.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span127994-131219Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_026169175::NZ_JAPFDU010000060.1::G00030Context members
QVE66_RS08610QVE66_RS08615
Partner locus tags
QVE66_RS08610QVE66_RS08615
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_287972313.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQVE66_RS08615Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAPFDU010000060.1Sequence record reported by the local genomic context database.
Genomic interval129 669-131 219 nt1 551 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span127 994-131 219 ntGCF_026169175::NZ_JAPFDU010000060.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_026169175::NZ_JAPFDU010000060.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPFDU010000060.1All displayed genes belong to this local TCS context.
Neighborhood span127 994-131 219 nt3 226 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
127 994 nt131 219 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QVE66_RS08610GCF_026169175#QVE66_RS08610
HKClassic
127 994-129 694 nt · Reverse (-)
QVE66_RS08615GCF_026169175#QVE66_RS08615
RRunclassifiedCurrent focus
129 669-131 219 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_026169175#QVE66_RS08615The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0135300
Simplified PFAM architecture for RROC_0135300
PFAM domain coverage: 189 / 516 aa (36.6%)
1 aa516 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[12-121] | HTH_18[426-504]
- Domain count: 2
- Matched identifier: RROC_0135300
- Positioned domains: Response_reg 12-121 ; HTH_18 426-504
Cluster members and taxonomy
Representative gene: GCF_026169175#QVE66_RS08615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 955 243 · GCF_026169175
AssemblyASM2616917v1 · Contighaploid
Genome composition2 947 900 bp · 42,5% GCBlautia sp.
Signal transduction countsGenes 94 · HK 46 · RR 47CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key