1 Response_reg#1
3-112 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:3:9.45e-36:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QVE66_RS00835
Response regulator OmpR family
Blautia sp. · GCF_026169175
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_026169175#QVE66_RS00835Stable P2CS identifier used across views.
GenomeGCF_026169175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 225 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-222 aa · 76 aa · 33.8% of protein
Raw token
Trans_reg_C:147:9.9e-24:222:77:77- Raw architecture: Response_reg:3:9.45e-36:112:111:111#Trans_reg_C:147:9.9e-24:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_026169175::NZ_JAPFDU010000006.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span26831-28425Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_026169175::NZ_JAPFDU010000006.1::G00021Context members
QVE66_RS00830QVE66_RS00835
Partner locus tags
QVE66_RS00830QVE66_RS00835
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_111918759.1Primary protein accession used for annex mappings.
UniProt accessionA0A2Z4U913Primary UniProt accession resolved in the annex database.
UniProt IDA0A2Z4U913_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQVE66_RS00835Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAPFDU010000006.1Sequence record reported by the local genomic context database.
Genomic interval27 748-28 425 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span26 831-28 425 ntGCF_026169175::NZ_JAPFDU010000006.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_026169175::NZ_JAPFDU010000006.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAPFDU010000006.1All displayed genes belong to this local TCS context.
Neighborhood span26 831-28 425 nt1 595 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 831 nt28 425 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QVE66_RS00830GCF_026169175#QVE66_RS00830
HKClassic
26 831-27 748 nt · Reverse (-)
QVE66_RS00835GCF_026169175#QVE66_RS00835
RROmpRCurrent focus
27 748-28 425 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003287895#DQQ01_RS04515Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1479185
Simplified PFAM architecture for RROC_1479185
PFAM domain coverage: 184 / 225 aa (81.8%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[147-221]
- Domain count: 2
- Matched identifier: RROC_1479185
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 147-221 ; Trans_reg_C 147-221
Cluster members and taxonomy
Representative gene: GCF_003287895#DQQ01_RS04515
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 955 243 · GCF_026169175
AssemblyASM2616917v1 · Contighaploid
Genome composition2 947 900 bp · 42,5% GCBlautia sp.
Signal transduction countsGenes 94 · HK 46 · RR 47CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key