1 Response_reg#1
7-114 aa · 108 aa · 47.2% of protein
Raw token
Response_reg:7:2.17e-27:114:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NSA51_RS17795
Response regulator, unclassified
Flavonifractor plautii · GCF_024622525
ClassRRTypeunclassifiedLength229 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024622525#NSA51_RS17795Stable P2CS identifier used across views.
GenomeGCF_024622525Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Flavonifractor
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage108 / 229 aa (47.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:7:2.17e-27:114:108:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024622525::NZ_JANKAP010000042.1::G00035
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2019-2708Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNSA51_17795RefSeq proteinWP_007495922.1
Context group ID
GCF_024622525::NZ_JANKAP010000042.1::G00035Context members
NSA51_RS17795
Partner locus tags
NSA51_RS17795
Partner old locus tags
NSA51_17795
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007495922.1Primary protein accession used for annex mappings.
UniProt accessionG9YXP2Primary UniProt accession resolved in the annex database.
UniProt IDG9YXP2_FLAPLDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNSA51_RS17795Primary locus identifier stored in the genes table.
Old locus tagNSA51_17795Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANKAP010000042.1Sequence record reported by the local genomic context database.
Genomic interval2 019-2 708 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 019-2 708 ntGCF_024622525::NZ_JANKAP010000042.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024622525::NZ_JANKAP010000042.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANKAP010000042.1All displayed genes belong to this local TCS context.
Neighborhood span2 019-2 708 nt690 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 019 nt2 708 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NSA51_RS17795GCF_024622525#NSA51_RS17795
RRunclassifiedCurrent focus
2 019-2 708 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000239295#HMPREF0372_RS18490Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1247699
Simplified PFAM architecture for RROC_1247699
PFAM domain coverage: 109 / 229 aa (47.6%)
1 aa229 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[7-115]
- Domain count: 1
- Matched identifier: RROC_1247699
- Positioned domains: Response_reg 7-115 ; Response_reg 7-115
Cluster members and taxonomy
Representative gene: GCF_000239295#HMPREF0372_RS18490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 292 800 · GCF_024622525
AssemblyASM2462252v1 · Contighaploid
Genome composition3 715 834 bp · 61,5% GCFlavonifractor plautii
Signal transduction countsGenes 71 · HK 33 · RR 38CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFlavonifractor
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Flavonifractor
Related genes
Preview from the same derived genome key